Plant Circular RNA Database

Detail information of Os09g0426100_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os09g0426100_circ_g.1
					
						ID in PlantcircBase
						osa_circ_039250
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr9: 15451971-15455470  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os09g0426100						
					
						Parent gene annotation
						
							Similar to cDNA, clone: J075189B12, full insert sequence. (Os09t
0426100-01);Similar to cDNA, clone: J075189B12, full insert sequ
ence. (Os09t0426100-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os09t0426100-02:3
Os09t0426100-01:3

General Information
CircRNA Name	Os09g0426100_circ_g.1
ID in PlantcircBase	osa_circ_039250
Alias	NA
Organism	Oryza sativa
Position	chr9: 15451971-15455470 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer
Parent gene	Os09g0426100
Parent gene annotation	Similar to cDNA, clone: J075189B12, full insert sequence. (Os09t 0426100-01);Similar to cDNA, clone: J075189B12, full insert sequ ence. (Os09t0426100-02)
Parent gene strand	-
Alternative splicing	NA
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os09t0426100-02:3 Os09t0426100-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATACTGCAGAGACGTGTACGTACGTGCCCGAGCAAAGCCGTCACAAACACCAAGAACAAGCCT
GTCGTCCCAAGGCTCCTCGTCTCCTTCACTTTTGCCctgcagtatgagccggagtgaccagcat
gagctgctgacgacgaggcagagcgcgccgagaacccacttgctgatcgccggcgagtggagga
gcatgttc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGCAGTATGAGCCGGAGTGACCAGCATGAGCTGCTGACGACGAGGCAGAGCGCGCCGAGAACC
CACTTGCTGATCGCCGGCGAGTGGAGGAGCATGTTCAGGTCACCAAGCGTGTAGTTCAGAAGCT
TTGGGCCTTTGAAGAACGCCATGGCCGTGGCTCCTCCCACGCAGACTATGGTTCCGGATATCTT
GGCCATGGTGCCCCGTTCTCTGACGTTAACTCTTTCCTGCCTGATGATGAGTTAACTGGTTACT
ACAATTTTGGTAAGATATATTTTGTTTATGCATAATGCGATGTATTTGGTACAATGTGCTACTT
TTGCCAAGAAAAGAATTCTTTGATATTAAGAACATATGTGGTTCCCGTCCACAATTTATTACAG
TTTACCACATCTAATGTTAGACAAGTTTTTGCTATAGAATCGTTGCTTAGGTTCTACTGTCGTA
GCTTTGTGAGGTGGCTTGTGCGACTACGGCCGTGTTTAGTTGTTTTGGCAAAAAAAAAATTTTG
ACGTATACAGACACCCATTTGAAGTATTAAACGTAGACTAATAACAAAACAAATTACAGACTCC
ACATGTAAACTGAGACAAATCTATTAAGCCTAATTAATTCATCATTAGTAAATGTTTATTGTAG
CACCACATTGTTAAATCATAACGTAACTAGCATGGTGGCCCGCGCAGATTACGCGGCTAGCATC
ATTATATTTTCTCTCATATAATAGCATATATGTTTTCTTAATGTATTATTCAAATATATTAAAA
TGACAACGTAATTTTAAATTTTGTACTAACTTTACGAAACTACTAATGTATAATATTCATATTG
TATTTTATATACATGCTAGTTATTAATTATTTTTAATATCAAATTTTAGTTATTTGTAAATTAT
ATTCCTATATGGACTCTAGACTCGTCTTTCAATATTTTTTTAATTCTGAATTTTTATTATCTGT
AAATTATATTTCTATATAGAGTCTCTTCTTCCAATATTATTTATTTTTAATTCTAATATTTTTA
TTATTTCTAATTGTATTTCTATGTGGACTCTAAACTTATCTTTTAATATTCTTTAATTTTTAAT
TTCAAATTTTAGTTACTTCTAAATTGTATTCCTATATTGACTTTAGACTCTTATTCCCTTGTTT
TGTTTAAATTCCGAATTTTAGTTATTTGTAAATTATAATTTTATACGGACTCTAAACTCTACTT
TTAATTTCATTATATTTATTTCGAATTTTAGTTAATTTTAAATTCCTATATGGACTCTATACTC
TACTTCTAATATTCCTTATTTTTAATTCCGAATTTCTATTATTTATTAATATTATTTCTATATG
AACTCTATACTCTTCTTCTAATATTCTTTATTTTTAATTCCGAATTTCAGTTATTTATAAATTT
TATTTCTATATGGACTCTATACTCTTCTTCTAATATTCTTTATTTTTAATTTCGAATTTTTGTT
ATTTATAAATTGTATTTCTATATGGACTCTAGTCTCCTCCTCCAATATTTCTTATTTTTTAATT
CTGAATTTTAACTATTTTTAAATTGTATTTCTCTATGGACTCTAGTCTCCTCTTCCAATATTCC
TTATTTTTTAATTCCGAATTTCAACTCTTTCTAAATTGTATTTCTATATGGACTCTAGTCTCCT
CTTCCAATATTCCTTATTTTTTAATTCCGAATTTTAACTATTTCTAAATTGTATTTCTATATAG
ACTCTGCTTTTCTTTTTCTCCAATTAATGTGGGAATTTTTAGGCTGTGAGAGCGAACGTGGCTC
CTTTTTCTATTCCTTTAATAAGTTAATATATTAGGCTCAAAAGATTTGTCCCGTATTTTACATG
CAAACTGTACAATTGGATTTTTTTTCCAAATTTAATGATCCATGCATGTGTTCAAACATTTGAC
GTGACGGAAAAGTTGAAAGTTTGAAGAGAACTAAACACACAGCCTACGTTGACCGCTAACAACA
CTTGTTTGTATACCAATATTTGTAAACTACTTCTACCTTAATAAAATTGGTCGGAAAACTTTTC
GCCTACCCAACGAACAAAAGTTTTAATGAGTTTGACCAAGTGAGACGGTCATTTGGTTGCAGCT
ACCATTATAACAAGATACTTCCAACAAATTAGGTCCCCTAATTGTTAACTCATAAAAATGTACT
CCGTAGCAAATATTTTGAACAATTAGGATCCTAGGCAAGTTTAGCACTTCTTATTGACAAATGG
CAACCAAACAGTCCTTAACCCTTTGGTGGCTGTTTTTGAGTTTAGTAGGTACACAGAGAAGGGT
ATCTGAGAAATGCTATGTTCTGGAAAGAAAAATAAGCAATTTTTTATTGGGAGGTTGACAATGT
GAAGTCTTTTATCGCCCACCTTTGCATACGTACAAACCCTGCAGTGGGTTTCACCTTATTTTCT
TTTTTCTTTTAAAAAAATATATATTGTACGTAAGTAACCAGACCAACTTATTTTTAAAGACGTA
CGTAAGACTGGTATTCATTAAACCTTTTGTTTTGAGGGAAAACTACAATAGTGACCAGCTGGAC
ACAATAATGGCCGCTAGTGAACGCGACCGACAGCAACATGCGCGTCTAGATGCCAATTAATGAT
CACAAAGATACGGAAACAGAGCAACTGACGAGAACGGGCAGACTCGTTTCATATATGATGTTGT
TTAAACATTTTTTTATAAAAAAAATATATCATATCTTATTACGTTATACACCCAATAAATATGA
ATGGCAAAATTCTATCTACATATAAGGAAAAAAACAAACCGGAATACGAAAAGTGCGATCGGAT
TGAAATTACATTTGAAGAAACACCAATACTCTCTCCGTTCTAAAAAAATAAATCTAGTACTAGA
TGTGACCATTCTAGTACAACGAATCTGATATATCCAGATTCGTATTATTAGGATGTGCCACATC
CAGTACTATGTTGATTTTTAATGGGACGGATGGAGTACATGTTATCTATTTTTTTTAGATTATT
TACGACCATTTAGAACACATGCAATGAAATACGGGAAAAAAGCTGCAACCCTCACGAAATTCAG
TCAGCTTCGTTAAATTTAAGTTTGATTAAATTTATAAAAAAAATATAGCAATGAAGGAAGTATT
AACGAAGGTGAAATGGCACAAGGATGCAAATGAAACAGTATAATTAAGGCTCTCACCCTGCTGA
CGCTGCCATCAAGAAAGTTATCGCGGGTATCAAATTGGTCATGGCCGTCGCCATGGATGACGAG
CCCAGATGCAGCCCTTGGTAGGTCAGGTTCTGGTTTACCGTCGCCCTGTTCGTCAGAATCAATC
CAAGATTGTCGAAAACAAGCTCGCAAAATTAACTACTAGCAGGGCTTCGCGCAGATGAGAAATC
AAAGCATAAATACTGCAGAGACGTGTACGTACGTGCCCGAGCAAAGCCGTCACAAACACCAAGA
ACAAGCCTGTCGTCCCAAGGCTCCTCGTCTCCTTCACTTTTGCC
						
					

			
		

Sequences
Splice junction sequence	AATACTGCAGAGACGTGTACGTACGTGCCCGAGCAAAGCCGTCACAAACACCAAGAACAAGCCT GTCGTCCCAAGGCTCCTCGTCTCCTTCACTTTTGCCctgcagtatgagccggagtgaccagcat gagctgctgacgacgaggcagagcgcgccgagaacccacttgctgatcgccggcgagtggagga gcatgttc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGCAGTATGAGCCGGAGTGACCAGCATGAGCTGCTGACGACGAGGCAGAGCGCGCCGAGAACC CACTTGCTGATCGCCGGCGAGTGGAGGAGCATGTTCAGGTCACCAAGCGTGTAGTTCAGAAGCT TTGGGCCTTTGAAGAACGCCATGGCCGTGGCTCCTCCCACGCAGACTATGGTTCCGGATATCTT GGCCATGGTGCCCCGTTCTCTGACGTTAACTCTTTCCTGCCTGATGATGAGTTAACTGGTTACT ACAATTTTGGTAAGATATATTTTGTTTATGCATAATGCGATGTATTTGGTACAATGTGCTACTT TTGCCAAGAAAAGAATTCTTTGATATTAAGAACATATGTGGTTCCCGTCCACAATTTATTACAG TTTACCACATCTAATGTTAGACAAGTTTTTGCTATAGAATCGTTGCTTAGGTTCTACTGTCGTA GCTTTGTGAGGTGGCTTGTGCGACTACGGCCGTGTTTAGTTGTTTTGGCAAAAAAAAAATTTTG ACGTATACAGACACCCATTTGAAGTATTAAACGTAGACTAATAACAAAACAAATTACAGACTCC ACATGTAAACTGAGACAAATCTATTAAGCCTAATTAATTCATCATTAGTAAATGTTTATTGTAG CACCACATTGTTAAATCATAACGTAACTAGCATGGTGGCCCGCGCAGATTACGCGGCTAGCATC ATTATATTTTCTCTCATATAATAGCATATATGTTTTCTTAATGTATTATTCAAATATATTAAAA TGACAACGTAATTTTAAATTTTGTACTAACTTTACGAAACTACTAATGTATAATATTCATATTG TATTTTATATACATGCTAGTTATTAATTATTTTTAATATCAAATTTTAGTTATTTGTAAATTAT ATTCCTATATGGACTCTAGACTCGTCTTTCAATATTTTTTTAATTCTGAATTTTTATTATCTGT AAATTATATTTCTATATAGAGTCTCTTCTTCCAATATTATTTATTTTTAATTCTAATATTTTTA TTATTTCTAATTGTATTTCTATGTGGACTCTAAACTTATCTTTTAATATTCTTTAATTTTTAAT TTCAAATTTTAGTTACTTCTAAATTGTATTCCTATATTGACTTTAGACTCTTATTCCCTTGTTT TGTTTAAATTCCGAATTTTAGTTATTTGTAAATTATAATTTTATACGGACTCTAAACTCTACTT TTAATTTCATTATATTTATTTCGAATTTTAGTTAATTTTAAATTCCTATATGGACTCTATACTC TACTTCTAATATTCCTTATTTTTAATTCCGAATTTCTATTATTTATTAATATTATTTCTATATG AACTCTATACTCTTCTTCTAATATTCTTTATTTTTAATTCCGAATTTCAGTTATTTATAAATTT TATTTCTATATGGACTCTATACTCTTCTTCTAATATTCTTTATTTTTAATTTCGAATTTTTGTT ATTTATAAATTGTATTTCTATATGGACTCTAGTCTCCTCCTCCAATATTTCTTATTTTTTAATT CTGAATTTTAACTATTTTTAAATTGTATTTCTCTATGGACTCTAGTCTCCTCTTCCAATATTCC TTATTTTTTAATTCCGAATTTCAACTCTTTCTAAATTGTATTTCTATATGGACTCTAGTCTCCT CTTCCAATATTCCTTATTTTTTAATTCCGAATTTTAACTATTTCTAAATTGTATTTCTATATAG ACTCTGCTTTTCTTTTTCTCCAATTAATGTGGGAATTTTTAGGCTGTGAGAGCGAACGTGGCTC CTTTTTCTATTCCTTTAATAAGTTAATATATTAGGCTCAAAAGATTTGTCCCGTATTTTACATG CAAACTGTACAATTGGATTTTTTTTCCAAATTTAATGATCCATGCATGTGTTCAAACATTTGAC GTGACGGAAAAGTTGAAAGTTTGAAGAGAACTAAACACACAGCCTACGTTGACCGCTAACAACA CTTGTTTGTATACCAATATTTGTAAACTACTTCTACCTTAATAAAATTGGTCGGAAAACTTTTC GCCTACCCAACGAACAAAAGTTTTAATGAGTTTGACCAAGTGAGACGGTCATTTGGTTGCAGCT ACCATTATAACAAGATACTTCCAACAAATTAGGTCCCCTAATTGTTAACTCATAAAAATGTACT CCGTAGCAAATATTTTGAACAATTAGGATCCTAGGCAAGTTTAGCACTTCTTATTGACAAATGG CAACCAAACAGTCCTTAACCCTTTGGTGGCTGTTTTTGAGTTTAGTAGGTACACAGAGAAGGGT ATCTGAGAAATGCTATGTTCTGGAAAGAAAAATAAGCAATTTTTTATTGGGAGGTTGACAATGT GAAGTCTTTTATCGCCCACCTTTGCATACGTACAAACCCTGCAGTGGGTTTCACCTTATTTTCT TTTTTCTTTTAAAAAAATATATATTGTACGTAAGTAACCAGACCAACTTATTTTTAAAGACGTA CGTAAGACTGGTATTCATTAAACCTTTTGTTTTGAGGGAAAACTACAATAGTGACCAGCTGGAC ACAATAATGGCCGCTAGTGAACGCGACCGACAGCAACATGCGCGTCTAGATGCCAATTAATGAT CACAAAGATACGGAAACAGAGCAACTGACGAGAACGGGCAGACTCGTTTCATATATGATGTTGT TTAAACATTTTTTTATAAAAAAAATATATCATATCTTATTACGTTATACACCCAATAAATATGA ATGGCAAAATTCTATCTACATATAAGGAAAAAAACAAACCGGAATACGAAAAGTGCGATCGGAT TGAAATTACATTTGAAGAAACACCAATACTCTCTCCGTTCTAAAAAAATAAATCTAGTACTAGA TGTGACCATTCTAGTACAACGAATCTGATATATCCAGATTCGTATTATTAGGATGTGCCACATC CAGTACTATGTTGATTTTTAATGGGACGGATGGAGTACATGTTATCTATTTTTTTTAGATTATT TACGACCATTTAGAACACATGCAATGAAATACGGGAAAAAAGCTGCAACCCTCACGAAATTCAG TCAGCTTCGTTAAATTTAAGTTTGATTAAATTTATAAAAAAAATATAGCAATGAAGGAAGTATT AACGAAGGTGAAATGGCACAAGGATGCAAATGAAACAGTATAATTAAGGCTCTCACCCTGCTGA CGCTGCCATCAAGAAAGTTATCGCGGGTATCAAATTGGTCATGGCCGTCGCCATGGATGACGAG CCCAGATGCAGCCCTTGGTAGGTCAGGTTCTGGTTTACCGTCGCCCTGTTCGTCAGAATCAATC CAAGATTGTCGAAAACAAGCTCGCAAAATTAACTACTAGCAGGGCTTCGCGCAGATGAGAAATC AAAGCATAAATACTGCAGAGACGTGTACGTACGTGCCCGAGCAAAGCCGTCACAAACACCAAGA ACAAGCCTGTCGTCCCAAGGCTCCTCGTCTCCTTCACTTTTGCC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.096544345

Conservation Information
Conserved circRNAs	NA
PMCS	0.096544345

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							15455241-15452085(+)
15455228-15451988(+)
15455226-15455271(-)
						
						Potential amino acid sequence
						
							MQPLVGQVLVYRRRARAKPSQTPRTSLSSQGSSSPSLLPCSMSRSDQHELLTTRQSAPRTHLLI
AGEWRSMFRSPSV*(+)
MTSPDAALGRSGSGLPSPCPSKAVTNTKNKPVVPRLLVSFTFALQYEPE*(+)
MATAMTNLIPAITFLMAASAGQERVNVRERGTMAKISGTIVCVGGATAMAFFKGPKLLNYTLGD
LNMLLHSPAISKWVLGALCLVVSSSCWSLRLILQGKSEGDEEPWDDRLVLGVCDGFARARRR*(
-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	15455241-15452085(+) 15455228-15451988(+) 15455226-15455271(-)
Potential amino acid sequence	MQPLVGQVLVYRRRARAKPSQTPRTSLSSQGSSSPSLLPCSMSRSDQHELLTTRQSAPRTHLLI AGEWRSMFRSPSV(+) MTSPDAALGRSGSGLPSPCPSKAVTNTKNKPVVPRLLVSFTFALQYEPE(+) MATAMTNLIPAITFLMAASAGQERVNVRERGTMAKISGTIVCVGGATAMAFFKGPKLLNYTLGD LNMLLHSPAISKWVLGALCLVVSSSCWSLRLILQGKSEGDEEPWDDRLVLGVCDGFARARRR*( -)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os09g0426100_circ_g.1

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