Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d054070_circ_g.2 |
ID in PlantcircBase | zma_circ_008329 |
Alias | Zm04circ00110, zma_circ_0001637, GRMZM2G054162_C1 |
Organism | Zea mays |
Position | chr4: 245873085-245874585 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d054070 |
Parent gene annotation |
Putative jumonji-like transcription factor family protein |
Parent gene strand | + |
Alternative splicing | Zm00001d054070_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d054070_T009:5 Zm00001d054070_T015:5 Zm00001d054070_T018:1 Zm00001d054070_T014:5 Zm00001d054070_T012:5 Zm00001d054070_T010:5 Zm00001d054070_T002:5 Zm00001d054070_T007:5 Zm00001d054070_T013:5 Zm00001d054070_T005:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.150210213 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
245873170-245873112(+) 245874529-245873104(+) 245873104-245874540(-) |
Potential amino acid sequence |
MKILSTKEASGGLQRCADYFGMPTAPSESNKEPRPEECVNELGIKQPVQHVASEEQEGVQDDAK ADANVMNVSFGKGKSEDSFGTINGTNSGDKIESPSGLAERTLTQPTTKGCSKQRGRSSNGRGNR TKKIEEGNASGLIAVAPESEDDDDDAAFIDGNQAEGGALWDIFRREDVSKLHDYLMKHAHEFRH CNFEPVKQVTHPIHDQCFYLTIEHKRKLKEEYGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCI KVALDFVSPENVRECIRLTEGFRLLPKWHKVNEDKLEVKKIALHAFNQAIKDITDESSNSNERS ISSHILMK*(+) MHSIKLLKISLMNHLIAMKGQYPHTY*(+) MCEDIDLSLLLDDSSVISLIA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |