Detail information of Zm00001d054070_circ_g.2


General Information
CircRNA Name Zm00001d054070_circ_g.2
ID in PlantcircBase zma_circ_008329
Alias Zm04circ00110, zma_circ_0001637, GRMZM2G054162_C1
Organism Zea mays
Position chr4: 245873085-245874585  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d054070
Parent gene annotation Putative jumonji-like transcription factor family protein
Parent gene strand +
Alternative splicing Zm00001d054070_circ_g.1
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d054070_T009:5
Zm00001d054070_T015:5
Zm00001d054070_T018:1
Zm00001d054070_T014:5
Zm00001d054070_T012:5
Zm00001d054070_T010:5
Zm00001d054070_T002:5
Zm00001d054070_T007:5
Zm00001d054070_T013:5
Zm00001d054070_T005:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATTATGTGTCTTGTTTGCCAGGTTAAGAAGATAGCTCTTCATGCATTCAATCAAGCTATTAA
AGATATCACTGATGAATCATCTAATAGCAATGAAAGgtcaatatcctcacacatactgatgaaa
taaaactcaaagcaaaaaggattgccgcggtggaaaagaagaagcggtgtttaggaatgaagat
tctatcta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1040
Transcript exons: 245873085-245873768,245873857-245873929,245874007-245874
092,245874194-245874313,245874509-245874585
GTCAATATCCTCACACATACTGATGAAATAAAACTCAAAGCAAAAAGGATTGCCGCGGTGGAAA
AGAAGAAGCGGTGTTTAGGAATGAAGATTCTATCTACCAAGGAAGCAAGTGGAGGCCTTCAACG
GTGTGCAGATTATTTTGGTATGCCAACAGCTCCCAGTGAATCTAACAAGGAGCCAAGGCCTGAA
GAGTGTGTAAATGAACTGGGCATTAAACAACCAGTACAGCATGTTGCTTCCGAGGAGCAGGAAG
GAGTTCAAGATGATGCCAAGGCAGATGCAAATGTTATGAATGTTTCTTTTGGTAAGGGAAAATC
AGAAGATTCTTTTGGTACAATTAATGGTACCAACAGTGGAGATAAAATAGAATCTCCTAGTGGT
TTAGCAGAAAGAACATTGACTCAGCCTACCACTAAGGGTTGCAGTAAGCAGCGTGGCCGTAGTT
CTAATGGTAGAGGAAACAGGACTAAAAAAATAGAAGAGGGGAATGCGTCTGGACTAATTGCTGT
GGCTCCCGAGTCAGAAGATGATGATGATGATGCCGCATTTATAGATGGAAACCAAGCAGAGGGT
GGTGCACTGTGGGATATTTTTCGACGGGAAGATGTGAGCAAACTGCATGATTATCTAATGAAGC
ATGCACATGAGTTTAGACATTGCAACTTTGAGCCAGTGAAGCAGGTTACTCATCCTATACATGA
TCAGTGTTTTTATCTAACAATTGAGCACAAGAGAAAGCTTAAGGAAGAATATGGAGTCGAGCCT
TGGACATTTGAACAGAAGCTAGGTGAGGCAGTATTTATCCCGGCAGGATGTCCCCACCAGGTTA
GAAATTTGAAGTCTTGCATAAAGGTTGCACTAGATTTTGTTTCTCCGGAAAATGTCCGAGAGTG
CATCAGGTTAACAGAAGGTTTCCGTCTGCTGCCGAAGTGGCATAAGGTGAATGAAGATAAACTG
GAGGTTAAGAAGATAGCTCTTCATGCATTCAATCAAGCTATTAAAGATATCACTGATGAATCAT
CTAATAGCAATGAAAG

Genomic sequence GTCAATATCCTCACACATACTGATGAAATAAAACTCAAAGCAAAAAGGATTGCCGCGGTGGAAA
AGAAGAAGCGGTGTTTAGGAATGAAGATTCTATCTACCAAGGAAGCAAGTGGAGGCCTTCAACG
GTGTGCAGATTATTTTGGTATGCCAACAGCTCCCAGTGAATCTAACAAGGAGCCAAGGCCTGAA
GAGTGTGTAAATGAACTGGGCATTAAACAACCAGTACAGCATGTTGCTTCCGAGGAGCAGGAAG
GAGTTCAAGATGATGCCAAGGCAGATGCAAATGTTATGAATGTTTCTTTTGGTAAGGGAAAATC
AGAAGATTCTTTTGGTACAATTAATGGTACCAACAGTGGAGATAAAATAGAATCTCCTAGTGGT
TTAGCAGAAAGAACATTGACTCAGCCTACCACTAAGGGTTGCAGTAAGCAGCGTGGCCGTAGTT
CTAATGGTAGAGGAAACAGGACTAAAAAAATAGAAGAGGGGAATGCGTCTGGACTAATTGCTGT
GGCTCCCGAGTCAGAAGATGATGATGATGATGCCGCATTTATAGATGGAAACCAAGCAGAGGGT
GGTGCACTGTGGGATATTTTTCGACGGGAAGATGTGAGCAAACTGCATGATTATCTAATGAAGC
ATGCACATGAGTTTAGACATTGCAACTTTGAGCCAGTGAAGCAGGTAACCAGTACTTTTTGTTT
GGCCACTAAAGTATGTCGTACCATATGACATCCAATTTCATGTGGAAGAGCTATCCCATATTTG
GCAGGTTACTCATCCTATACATGATCAGTGTTTTTATCTAACAATTGAGCACAAGAGAAAGCTT
AAGGAAGAATATGGTTAGTTAATAACCTTTATGTCTTTAAACTTGAACTTCACCCTAGTGATAT
TCCCTGGTTTCATGCTTCTTTTGCAGGAGTCGAGCCTTGGACATTTGAACAGAAGCTAGGTGAG
GCAGTATTTATCCCGGCAGGATGTCCCCACCAGGTTAGAAATTTGAAGGTATGACATGACATGG
AAATAGCTGTTTGTCCCCACTGTCATCAGTGACATGCTCCTTAATCAAATTAGCTGCTAATCAC
TTGTACCTTTTTATTGGGCAGTCTTGCATAAAGGTTGCACTAGATTTTGTTTCTCCGGAAAATG
TCCGAGAGTGCATCAGGTTAACAGAAGGTTTCCGTCTGCTGCCGAAGTGGCATAAGGTGAATGA
AGATAAACTGGAGGTTTGTCACTCACTCTGTTCATACTAATGTAACATTTGCTAATTCTTTTTT
ATGATTGTAAATGAAGTATTCTTGTGTATATTATGCCATTTTTTTGTCTGCCCTAGCTTCTATA
TCGTCTCTATTAGGCATTCTTATCTTTCTGTCCGCATGAATCTAGATATTTAAATTTAAATTAT
GTGTCTTGTTTGCCAGGTTAAGAAGATAGCTCTTCATGCATTCAATCAAGCTATTAAAGATATC
ACTGATGAATCATCTAATAGCAATGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.150210213
Functional Information
Coding potential Y
Potential coding position 245873170-245873112(+)
245874529-245873104(+)
245873104-245874540(-)
Potential amino acid sequence MKILSTKEASGGLQRCADYFGMPTAPSESNKEPRPEECVNELGIKQPVQHVASEEQEGVQDDAK
ADANVMNVSFGKGKSEDSFGTINGTNSGDKIESPSGLAERTLTQPTTKGCSKQRGRSSNGRGNR
TKKIEEGNASGLIAVAPESEDDDDDAAFIDGNQAEGGALWDIFRREDVSKLHDYLMKHAHEFRH
CNFEPVKQVTHPIHDQCFYLTIEHKRKLKEEYGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCI
KVALDFVSPENVRECIRLTEGFRLLPKWHKVNEDKLEVKKIALHAFNQAIKDITDESSNSNERS
ISSHILMK*(+)
MHSIKLLKISLMNHLIAMKGQYPHTY*(+)
MCEDIDLSLLLDDSSVISLIA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress