Plant Circular RNA Database

Detail information of Os12g0233800_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os12g0233800_circ_g.1
					
						ID in PlantcircBase
						osa_circ_010903
					
						Alias
						Os12circ03152/Os_ciR773
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 7330351-7331709  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						SMALT, Segemehl, find_circ
					
						Parent gene
						
							Os12g0233800						
					
						Parent gene annotation
						
							Similar to DNA-binding factor of bZIP class. (Os12t0233800-01);S
imilar to DNA-binding factor of bZIP class. (Os12t0233800-02);Si
milar to DNA-binding factor of bZIP class. (Os12t0233800-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os12g0233800_circ_igg.1 Os12g0233800_circ_igg.2 Os12g0233800_circ_g.2 						
					
						Support reads
						11/34
					
						Tissues
						leaf and panicle/root
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os12t0233800-02:3

General Information
CircRNA Name	Os12g0233800_circ_g.1
ID in PlantcircBase	osa_circ_010903
Alias	Os12circ03152/Os_ciR773
Organism	Oryza sativa
Position	chr12: 7330351-7331709 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	SMALT, Segemehl, find_circ
Parent gene	Os12g0233800
Parent gene annotation	Similar to DNA-binding factor of bZIP class. (Os12t0233800-01);S imilar to DNA-binding factor of bZIP class. (Os12t0233800-02);Si milar to DNA-binding factor of bZIP class. (Os12t0233800-03)
Parent gene strand	-
Alternative splicing	Os12g0233800_circ_igg.1 Os12g0233800_circ_igg.2 Os12g0233800_circ_g.2
Support reads	11/34
Tissues	leaf and panicle/root
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os12t0233800-02:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGAAACAGAAAGTATTAACAACCTGTGGAACATCCATACCTATGGTGTATGGCTCTATGCACAG
CTCTTGTATGAGAAATTTAACCCCAGAACTGTCTTCctcttgctaccacttaccccccatggct
tccttccttgctgctagcctgctcattgccctcgtagtgtcaggctccaacgtcgctgctacgc
cttcccca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 187
Transcript exons: 7330351-7330485,7331658-7331709
CTCTTGCTACCACTTACCCCCCATGGCTTCCTTCCTTGCTGCTAGCCTGCTCATTGCCCTCGTA
GTGTCAGGCTCCAACGTCGCTGCTACGCCTTCCCCATCGGCGGTGGTGGGCAATGGCGACATCG
CCTCCACATGGCTCTATGCACAGCTCTTGTATGAGAAATTTAACCCCAGAACTGTCTTC
Transcript length: 207
Transcript exons: 7330351-7330508,7331661-7331709
CTCTTGCTACCACTTACCCCCCATGGCTTCCTTCCTTGCTGCTAGCCTGCTCATTGCCCTCGTA
GTGTCAGGCTCCAACGTCGCTGCTACGCCTTCCCCATCGGCGGTGGTGGGCAATGGCGACATCG
CCTCCACTGCACAGGAGATGCAGCGAGCCCGCTCTATGCACAGCTCTTGTATGAGAAATTTAAC
CCCAGAACTGTCTTC
Transcript length: 213
Transcript exons: 7330351-7330523,7331670-7331709
CTCTTGCTACCACTTACCCCCCATGGCTTCCTTCCTTGCTGCTAGCCTGCTCATTGCCCTCGTA
GTGTCAGGCTCCAACGTCGCTGCTACGCCTTCCCCATCGGCGGTGGTGGGCAATGGCGACATCG
CCTCCACTGCACAGGAGATGCAGCGAGCCCGCTACTTCACCTTCGACAGCTCTTGTATGAGAAA
TTTAACCCCAGAACTGTCTTC
Transcript length: 224
Transcript exons: 7330351-7330523,7331659-7331709
CTCTTGCTACCACTTACCCCCCATGGCTTCCTTCCTTGCTGCTAGCCTGCTCATTGCCCTCGTA
GTGTCAGGCTCCAACGTCGCTGCTACGCCTTCCCCATCGGCGGTGGTGGGCAATGGCGACATCG
CCTCCACTGCACAGGAGATGCAGCGAGCCCGCTACTTCACCTTCGTGGCTCTATGCACAGCTCT
TGTATGAGAAATTTAACCCCAGAACTGTCTTC
Transcript length: 236
Transcript exons: 7330351-7330538,7331662-7331709
CTCTTGCTACCACTTACCCCCCATGGCTTCCTTCCTTGCTGCTAGCCTGCTCATTGCCCTCGTA
GTGTCAGGCTCCAACGTCGCTGCTACGCCTTCCCCATCGGCGGTGGTGGGCAATGGCGACATCG
CCTCCACTGCACAGGAGATGCAGCGAGCCCGCTACTTCACCTTCGTCATGCTCATCAGGACTCT
ATGCACAGCTCTTGTATGAGAAATTTAACCCCAGAACTGTCTTC
Transcript length: 274
Transcript exons: 7330351-7330575,7331661-7331709
CTCTTGCTACCACTTACCCCCCATGGCTTCCTTCCTTGCTGCTAGCCTGCTCATTGCCCTCGTA
GTGTCAGGCTCCAACGTCGCTGCTACGCCTTCCCCATCGGCGGTGGTGGGCAATGGCGACATCG
CCTCCACTGCACAGGAGATGCAGCGAGCCCGCTACTTCACCTTCGTCATGCTCATCAGGATGGT
GCAGGAGAAGATCCCACACAACACCACCTTCCTGCTCTATGCACAGCTCTTGTATGAGAAATTT
AACCCCAGAACTGTCTTC
						
					

						Genomic sequence
						
							CTCTTGCTACCACTTACCCCCCATGGCTTCCTTCCTTGCTGCTAGCCTGCTCATTGCCCTCGTA
GTGTCAGGCTCCAACGTCGCTGCTACGCCTTCCCCATCGGCGGTGGTGGGCAATGGCGACATCG
CCTCCACTGCACAGGAGATGCAGCGAGCCCGCTACTTCACCTTCGTCATGCTCATCAGGATGGT
GCAGGAGAAGATCCCACACAACACCACCTTCCTGATGCCCAACGACAGGATGCTGTCAACTGCA
ACCATCCCGGAGAGCCAAGTGATGGAGTTCCTGTCAAGGCATTCCATCCCGGCTCCGCTCATGT
TCGACGACCTCATCAAGCTTCCCAACGCAACAATAGTTCCCACAGCCCATTCGAGCCAGACAAT
CACAATAACCAATGTGAAGCACCAGAAGATCTACTTCAACAATATTGAGCTCATCAGTCCTGAC
GTCTGCCGCGTAGGAGATTTGTTCAGGTGCCATGGAATCAATGGAGTTATAAGGCCAATAGTAC
CAAGAGGAAAAGGGTCAGCTTGCCCTGGCCACCTTGCTCCAGCAACTGCAGCACCTGGACCAGC
TTCAGGGGCAAACCGGTCCTTGGAGACGTCTTCGCTAACCTCTCCCAACATGAGTTCTGCCACA
AGTCCATCCCTGCAACCTGCAGCAGAAAGCCCTCAAAGTTCAGACACTTCCACGTCACAAATTG
CATCTTCTTATACTACACTAATCTTAGTGTTAGTCTTTTCCATTTTCTAAGTTTGGATCCATGG
ACATACAGTTCAATGGATGCATCTCTATTCAGGGAAAGCTAATGCAAGCTAGTAGTTTTTTGTC
TGAACATGCCTTCACATCTTTTTCTGATCTATACCTATTTGGTATTTAGAGGAAAAGCTTCAAA
TATTTGTTAATTCATTTGATCACTGTTCTTTATTAGAAAAGCGATTATATTTTCCTTTTTTGTA
CGATGGGAAAAATTAGCAAGATGGAAATCAAGCCTTAAGAGTTTTAAGTTATTTCTGTTCATAT
GATTATTATCATGCATAACACAGTAAGATCAATTATAACAACACGATTAGTTAGACTATTGAGT
AGGTTTCCAAAAGCAGGTCTGACCAACCTGGAGCAGCATCAACCCAAATTTGCCAGCCTTCAGC
AGCTTCCCATGCATTTGCTGAAGATCAATGTGTTGGCCAGCCCAAATTAAACTGGAATGATTGA
ATGAATAGCTCCATGTTAGACAAAAGTTTTATGATAATATAATAGAAACAGAAAGTATTAACAA
CCTGTGGAACATCCATACCTATGGTGTATGGCTCTATGCACAGCTCTTGTATGAGAAATTTAAC
CCCAGAACTGTCTTC
						
					

			
		

Sequences
Splice junction sequence	AGAAACAGAAAGTATTAACAACCTGTGGAACATCCATACCTATGGTGTATGGCTCTATGCACAG CTCTTGTATGAGAAATTTAACCCCAGAACTGTCTTCctcttgctaccacttaccccccatggct tccttccttgctgctagcctgctcattgccctcgtagtgtcaggctccaacgtcgctgctacgc cttcccca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 187 Transcript exons: 7330351-7330485,7331658-7331709 CTCTTGCTACCACTTACCCCCCATGGCTTCCTTCCTTGCTGCTAGCCTGCTCATTGCCCTCGTA GTGTCAGGCTCCAACGTCGCTGCTACGCCTTCCCCATCGGCGGTGGTGGGCAATGGCGACATCG CCTCCACATGGCTCTATGCACAGCTCTTGTATGAGAAATTTAACCCCAGAACTGTCTTC Transcript length: 207 Transcript exons: 7330351-7330508,7331661-7331709 CTCTTGCTACCACTTACCCCCCATGGCTTCCTTCCTTGCTGCTAGCCTGCTCATTGCCCTCGTA GTGTCAGGCTCCAACGTCGCTGCTACGCCTTCCCCATCGGCGGTGGTGGGCAATGGCGACATCG CCTCCACTGCACAGGAGATGCAGCGAGCCCGCTCTATGCACAGCTCTTGTATGAGAAATTTAAC CCCAGAACTGTCTTC Transcript length: 213 Transcript exons: 7330351-7330523,7331670-7331709 CTCTTGCTACCACTTACCCCCCATGGCTTCCTTCCTTGCTGCTAGCCTGCTCATTGCCCTCGTA GTGTCAGGCTCCAACGTCGCTGCTACGCCTTCCCCATCGGCGGTGGTGGGCAATGGCGACATCG CCTCCACTGCACAGGAGATGCAGCGAGCCCGCTACTTCACCTTCGACAGCTCTTGTATGAGAAA TTTAACCCCAGAACTGTCTTC Transcript length: 224 Transcript exons: 7330351-7330523,7331659-7331709 CTCTTGCTACCACTTACCCCCCATGGCTTCCTTCCTTGCTGCTAGCCTGCTCATTGCCCTCGTA GTGTCAGGCTCCAACGTCGCTGCTACGCCTTCCCCATCGGCGGTGGTGGGCAATGGCGACATCG CCTCCACTGCACAGGAGATGCAGCGAGCCCGCTACTTCACCTTCGTGGCTCTATGCACAGCTCT TGTATGAGAAATTTAACCCCAGAACTGTCTTC Transcript length: 236 Transcript exons: 7330351-7330538,7331662-7331709 CTCTTGCTACCACTTACCCCCCATGGCTTCCTTCCTTGCTGCTAGCCTGCTCATTGCCCTCGTA GTGTCAGGCTCCAACGTCGCTGCTACGCCTTCCCCATCGGCGGTGGTGGGCAATGGCGACATCG CCTCCACTGCACAGGAGATGCAGCGAGCCCGCTACTTCACCTTCGTCATGCTCATCAGGACTCT ATGCACAGCTCTTGTATGAGAAATTTAACCCCAGAACTGTCTTC Transcript length: 274 Transcript exons: 7330351-7330575,7331661-7331709 CTCTTGCTACCACTTACCCCCCATGGCTTCCTTCCTTGCTGCTAGCCTGCTCATTGCCCTCGTA GTGTCAGGCTCCAACGTCGCTGCTACGCCTTCCCCATCGGCGGTGGTGGGCAATGGCGACATCG CCTCCACTGCACAGGAGATGCAGCGAGCCCGCTACTTCACCTTCGTCATGCTCATCAGGATGGT GCAGGAGAAGATCCCACACAACACCACCTTCCTGCTCTATGCACAGCTCTTGTATGAGAAATTT AACCCCAGAACTGTCTTC
Genomic sequence	CTCTTGCTACCACTTACCCCCCATGGCTTCCTTCCTTGCTGCTAGCCTGCTCATTGCCCTCGTA GTGTCAGGCTCCAACGTCGCTGCTACGCCTTCCCCATCGGCGGTGGTGGGCAATGGCGACATCG CCTCCACTGCACAGGAGATGCAGCGAGCCCGCTACTTCACCTTCGTCATGCTCATCAGGATGGT GCAGGAGAAGATCCCACACAACACCACCTTCCTGATGCCCAACGACAGGATGCTGTCAACTGCA ACCATCCCGGAGAGCCAAGTGATGGAGTTCCTGTCAAGGCATTCCATCCCGGCTCCGCTCATGT TCGACGACCTCATCAAGCTTCCCAACGCAACAATAGTTCCCACAGCCCATTCGAGCCAGACAAT CACAATAACCAATGTGAAGCACCAGAAGATCTACTTCAACAATATTGAGCTCATCAGTCCTGAC GTCTGCCGCGTAGGAGATTTGTTCAGGTGCCATGGAATCAATGGAGTTATAAGGCCAATAGTAC CAAGAGGAAAAGGGTCAGCTTGCCCTGGCCACCTTGCTCCAGCAACTGCAGCACCTGGACCAGC TTCAGGGGCAAACCGGTCCTTGGAGACGTCTTCGCTAACCTCTCCCAACATGAGTTCTGCCACA AGTCCATCCCTGCAACCTGCAGCAGAAAGCCCTCAAAGTTCAGACACTTCCACGTCACAAATTG CATCTTCTTATACTACACTAATCTTAGTGTTAGTCTTTTCCATTTTCTAAGTTTGGATCCATGG ACATACAGTTCAATGGATGCATCTCTATTCAGGGAAAGCTAATGCAAGCTAGTAGTTTTTTGTC TGAACATGCCTTCACATCTTTTTCTGATCTATACCTATTTGGTATTTAGAGGAAAAGCTTCAAA TATTTGTTAATTCATTTGATCACTGTTCTTTATTAGAAAAGCGATTATATTTTCCTTTTTTGTA CGATGGGAAAAATTAGCAAGATGGAAATCAAGCCTTAAGAGTTTTAAGTTATTTCTGTTCATAT GATTATTATCATGCATAACACAGTAAGATCAATTATAACAACACGATTAGTTAGACTATTGAGT AGGTTTCCAAAAGCAGGTCTGACCAACCTGGAGCAGCATCAACCCAAATTTGCCAGCCTTCAGC AGCTTCCCATGCATTTGCTGAAGATCAATGTGTTGGCCAGCCCAAATTAAACTGGAATGATTGA ATGAATAGCTCCATGTTAGACAAAAGTTTTATGATAATATAATAGAAACAGAAAGTATTAACAA CCTGTGGAACATCCATACCTATGGTGTATGGCTCTATGCACAGCTCTTGTATGAGAAATTTAAC CCCAGAACTGTCTTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_003369* osi_circ_010275 osi_circ_010276 osi_circ_003370* 
						
						PMCS
						0.396940471

Conservation Information
Conserved circRNAs	osi_circ_003369* osi_circ_010275 osi_circ_010276 osi_circ_003370*
PMCS	0.396940471

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015

circRNA

Detail information of Os12g0233800_circ_g.1

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