Detail information of BGIOSGA024303_circ_g.2


General Information
CircRNA Name BGIOSGA024303_circ_g.2
ID in PlantcircBase osi_circ_017072
Alias Chr07:18057157_18062315(MH63RS2), Chr07:18590841_18595995(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr7: 16063283-16067929  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2
Parent gene BGIOSGA024303
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA024303_circ_g.1 BGIOSGA024303_circ_g.3 BGIOSGA024303_circ_g.4 BGIOSGA024303_circ_g.5 BGIOSGA024303_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   NN-CA
Number of exons covered BGIOSGA024303-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCAACTTTTGATTTAAAGGAGGGTATACGATCAAATCTCCCGGTTTACTTTTCCAACTTGTAA
ATCGTAGTCTTCACTTCTACAAAAGGGCATGGAAACcctccaaacagcatctgcaggattctga
tgttcaataggatgttcatgaccaggaaccctctgctgattcaaccccgcattaagttgttctg
caattaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCCAAACAGCATCTGCAGGATTCTGATGTTCAATAGGATGTTCATGACCAGGAACCCTCTGC
TGATTCAACCCCGCATTAAGTTGTTCTGCAATTAACTGGACGTTTCCTACCTCTGCTGTAGATC
TTGTGTGACCTTGAGATGACAGAAAGAGAGGTCTTCGACAAGTTGGACATGAGTAACCATCCAT
TAATCCTTGGTCCAACCTACACATAGCAACAATACTTAACGGGAAAAATCAAACATAGAATGCN
ATTTGATGTGGCACATTTGATGGTAAGATGTGAAGCTATACACAATTGCTAAGCATATCTACTA
TTTGTGGGTGTAGAAGTGTTGCATATTTTTGTACTAAGTGAGAAGCAGAGGTCAGTACAGTTGT
ACGAAAGAGCAACAAAGGGAGCTGAACAACAGTCTAAGCTGAAATACAAGTAATACTATGATCT
GTTACTAATGACTAACAACTGCAACTTCTTCACATCAGCTTGCTGGCAAGCTTCAATCTCGTCA
AAGATATTTGTGAGAATCTGACTAATAATCTGACTAATAATCTCGTCAAGGACCATCCACCATG
CTCAGCAATATCAATTTTCCTTATGCAGAGATTCCATGACAGAAAAATTTAAGTCAACCGTAAA
ATAGGAATGTTGGTCCCGTATTTTAATAAGTAAATTTGGAATGCATAAGATCAAATGGACAGTT
ATGACGGCATACGGAGTATGTTCATAACTACAGCCTGCAGTCCTTATGCAAATAGTGGGAGCAC
AATTTCCAGAAAATGAAAATGAATCTACTTAAAGTTTTTTTTTTGGTAGGACATTATGAGCTAT
AATAAAATTGAACCACAGACCATCAATTGCAAAATAGTAAAAGGAACTCATCGCGTACCATGAT
CGCAAGCAAGCTAGATGAAATAGATGGTTGCAGGATAACTTTTTAGCTCGAGCCATTGGTCCCT
AGGAGTTGCAGATTTCAAAAGAAAATCAGATACACAAGCACTCAAAACACTACAGATCCTGTGA
AAATCTAGAAATTGTTTACCCTACAGATGGCACACTCATCGTCGTATGCACAGATTTCATCATA
TGTAGCATCTGGAAGTGCTCCGTCGAGTGAACTAAGTGCCTTTCGTAACTTGGCATAAGTTTTT
ATCCGCTTCCAAAATGAAGCTATAAGAGCCTGCAAACATTTTCAAAGAATTCCAGTCAGTACAT
CATACATATTTATTTAAAGTTTATCGAAGTTAACAAGTGAATGTCACACTCACACGCAAGTTCA
ATAGGAGAACAGCATCAACCAGATGAAACGCCATACCACGGAGCCAGAAGATCATTGAGTAATG
ACCAAGTGACATCAATAAGCTTATCAAGTCAATGACAAAACCAAAATTTCTGACTAGTCTGCCT
CTCCACTCAGAAAAAGATCCTGCAGTTACAAAGCATGATTGGCCCTGGTGGTAAAGTTGAGATA
ATTCAAGAGACGCATGTACAAGAAATGAGACATGGACTGCTCAACCTGAACTAAATTAATGTTC
CAACAGATCATAGAGCAAAATTTACAGTATTACAAACAGACCAGACCAACATAACAAATGTCAG
ATGAGTGAATGAAACCTCTGTTATATACTCCGGCCTGTCAGGAAAAAAAAAAAAGGTTCTGTTT
TTTACCATTGGCATGGCCTTGGAAAAAAAAGATCAGCAATTTATATAAAACCGATTATTGAGAT
CAATATACATGTTTTTTCTTTGTGACCAATCTAAATATTCATGGATATGTTACCAGTGAAAGAT
AAAATAGTTTACTTATGCGTTCTAGGATTTTTTTTTTCATTCACTGAATCTGGTGTTTGCATTC
TTGTCTAGGTTAGTAATAACTGGTTAACCACGAAACTCATACAGCATTATCCTGCATGCTCAGC
CCTAGAGGGTTTACTAAACTGAATTAAATGAGTCTCTGAGCAGCGAAGACACGCTTATCACCTG
CTGCTTGCTTATAAGTTTTTTGGAAATCAAGATAGTCCACACCACTGTCCATTTGATGTCGTTG
CCATATGTCAAACAACTGAAATCCATGCACCATGATTGACTGCTAGGAAAATACTATGTGAGAA
AAGGTTGAAGATATTCAGAAGTAATAACTGCATGCAGGTAAATGCTCATAATATTTTTAACATC
TCTAGTTGGCATTTATAAGCACCACCTCCTTTGAACATTAAATGCAATGCAGATTTCTTTGATA
ATGCAAGATCGTTATAAATTAAGAAAAGATAAGGAGGAAAAACTTCCCACAATCTGGGTTGAAG
TACCTGCAGTGTCTCAAAGCCAATACTAAGTGGCTCAAAAAACATAAGCCAAAATAGTTGAGAA
TTACACGACTTGCAGAACCCAACACAAAGCTTTATCCTGGAGAAGATAGACAATCAATTAAGTG
TGAGCTTTTAAAAGTATTACATGCTACAGTTGTGTCAAGGACACCATAACAAAAGGAAATGTGA
TAAACTCAAGCATCAATACAACTCATTCCATTATACTCCCTCCGGTCAAAAATATTTGTCGTTT
TAGGACCAGATTTGGACAAACTTTTAAAATTCCGAATACAATTTTATGTGAATAAATTTATAAA
GTCTAATAAGTTCATGATATTATGAAAGTACTTTTTGAGGCAAATCTATGTATATCATTTGTTT
TCTTTTTTAAACTAAGCATTTAAGAAATTATTGATGGTCAGAATTTTAAAAGTTTGACCAAATC
TTGTCCTAAATGACATATTTTTTTTAGAACACGCAGGAGATCTGCATATCATTTCATTAAGAAA
AAGGAGAAAAGGTGGACGATGTTAGAGAAAGACTCCGACACCCGCCACCAAGGGTACAATAGAA
CACCACACACCCAAAGGAAGTAAAACAAACTAGTGCATTAGCAGCACAGCCCTAGTAAAGAGAT
CACCAAGCCTAGCAGCTCCTGCTAGGCACCAAAGAGCACCCTCATTAGCGATGGCTTGGAGGAC
ATCAACCAAGCATGGGGTGGCACCATTAAAAACACAATTGTTCCTGTGCTTCCAAATTTCCCAA
GCAACCAAGATGATTAACGTAGGATTCTGATAGGATTGCAGGATTGAGAAAACGTAGGAATAGG
AAAAACGTAGGATTCTGATAGGAATGTAAGTGTAAAACAGAGGATTGCAAAACTTAGGAAAAAC
ACAGGAATGACCGTTTGATTGAACCGCAGGAAAAACGCAGGAATTGGATGAGAGAGATAGACTC
AAAGAAAGTTACCAAGAGGTTGAAGCTCTTGCTAAATTTCCTCCAAAATCTCTATAGGATTGTC
CATTCCATAGGAATTTTAAAGGATTGGATATGATTCAATCCTTTGTTTCAAAGGGCTTCATAGG
AGATTTTCCTATAGGATTGAAATCCTCCAAAATTCCTATGTTTTTCCTCCAATTCAAAGGGGCC
CTAAAGAGTTTAGCCCTTCCTTCTCATTATCAGGTAAACCCCTTACTGTTCTTGACCACCAATT
GGCAAACCTAGCAGTATCCTGGGTTGGAAAGCTAGAGTAGCCAAGCCGTTGCAGGACCAAATAA
ACGAGATTTGGAGTGAGAGATGTCCCTCCAAACTTTTTTTAAGAAGAAATTGTGAGAGTGTTGG
GGATTGAACAAGGGATCTTAGGGTTGAAACCACACACCCCTTGCCACTGCACTATCAAGTGCAT
CTCTAAATGACAAATAATTTGACCGGACAGAGTAAGTTTATAACAGAAGTTGCAAGTTGCAAGA
AATTGTAAGGGACAATAATTTCATGTTGGAAGTGAGTAAGTGACATCATGCATCTCTGACATCT
ACAAAATCAAAATAAATTTAAGTGTACCCAACACCTAAGCAAAGAAAAAAGTATGTGTAAATAA
TATTTCTAAACAAAAAACAGTAAAATGCAGACTAACCAGGGAATATTACCATAGTACATCAGCC
GATAGAACCAGCAATAGTGCAGAATATACACGAAAGTACTTTGATGGAGTCGCTGATGGTGAAG
CATTGAGCTGTTCAAGGCGTTCTCTAGCCAATGATTGAAACATCTGGATGTACGAGAAATTTTA
GTTAATGTAAGGGTATAATCTTAACTAGTTGAAGACTTGAAGTTCTAAAACATTACCTTCAGGG
AACAAAGAAGGCCCAACCAACTTGACCAAAGGATTATTTGTTGAGAATTAGGAGGCACAACCAG
TGGGAGAAAAGTTCCCTGGAATACGAGAGAGATCATTGGCATTTCTTCACATGGCAGGCAACAA
CAAGAACATAAATAAATAACTGTAAATTGATCATACATCCTCCCTTAGGGCTTGTTCGGTTTGG
AAGGGGTTGAAGGGGATTGGAGGGGTTTGAGGTGGAATAATTCCACACCACAATAGGTGTGGAA
TAAATCCCCTCCAATCCCTCCCTCCTGGGGATTAACCGAACATGGCCTTAAGATTGAAATTGAG
GATGTACCCTCCTGGCCCACAAGTTAGGTTGATGACCCCACATGTCAATGGCATAGGAGGCTAA
ATCCTCAACTTTTGATTTAAAGGAGGGTATACGATCAAATCTCCCGGTTTACTTTTCCAACTTG
TAAATCGTAGTCTTCACTTCTACAAAAGGGCATGGAAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR1861a
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021