Detail information of Solyc09g091120.2_circ_g.1


General Information
CircRNA Name Solyc09g091120.2_circ_g.1
ID in PlantcircBase sly_circ_002984
Alias NA
Organism Solanum lycopersicum
Position chr9: 70467555-70472143  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI
Parent gene Solyc09g091120.2
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing NA
Support reads 3
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Solyc09g091120.2.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAAAGTTGAATTTTCAGCCGCCAGAGACTCTGCTAGAGTTCGCGAAGCCTCAAGAGCACGTTG
TAGAGAGAACTTCTCTTGTGTTAAATCTTCAATATGcttcaatgtagagcactgagatgattca
actgacagggcttttgttaattcgtctttctccaaggctaactgtagtcattccaagtagtgca
atatttta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCAATGTAGAGCACTGAGATGATTCAACTGACAGGGCTTTTGTTAATTCGTCTTTCTCCAAG
GCTAACTGTAGTCATTCCAAGTAGTGCAATATTTTAGTTATTAGTTAATAAATATGCCTTGATT
TTTAAGGGAACAAAGATGATGGGACAAAATTAGAGGGAGCAGAAAATGATCAGTCTCAAGGATA
TCATGCTACCTCAGAAATTAATGTATTAATGTTTTGGATCATCCTAATCTGATCTGGAGGAATG
GCTGGTGACAAACTTCCGAGACTAAACTGTCCAAAATCGGGCAGGGAAGATGTGGTGGGGCCAT
CAATACCAACCAAATTAGTATCATTTATGGTGCCACTTGCAATATTATCTTCACCTGAATGGAC
ACAAATTGAATTCTATGAATATATATAAAGCAAAAGATAATTTTTAAAAAAAAACTGAAAAACA
ATATGTCGCAGTAATTTGAGAAATCTGAAATACATACGGAGATCCTCTGTAGAAGTTGATACAT
CTATTTTTGTAGGCATATTCCTGCTAGGATCAACTGACTTTCCATTAGCAGAAGCTATTAGGAA
TTTGGATTGCAAGAGCTTCTTTTCTGTTTAGAAGAAGACAATAGAGAAACAGAGAGGAATCATT
GATTTCATTTCTGATAGTTGGATGTTTTTATCAAGCCTGGGATGCTTATTTAAGAAACTTTAAG
GCAGTGAAAATGGAAAAATTGCAAAAATGACACATCTCATGAAAAACGCAAACCACCCTTTTCT
CTAGGCACAAGCAGATATAACCATATCTTACCTTCCTTTAAAGCATCGATTGTTGATTGCAGAT
CTTGACGATCTTTTTCAAGGCTTGCGATTTTCTTTCTGCAAGAAGATAGAGAAAGTTGGATGAG
ATAAAAACACATCCCAACAGAAATCTGCAGTTTAACGAGAATAAGATTTAATTTTTTTATTCTG
ATATTCATTCACGCACATTACATCAATGCTAAAACTTTTATGCCAAATTAGTATGAGCTTGTGT
ACATGCAACTACTCAATATGATTCCCAACTACTTACTTTCAGAGCCACAAATCTTTTAAAGGTA
TCATAACTAAAAGCAATACATTCTGCTGCCATTTGGCACATCCTTTTCATATTCATAAAACTAT
TTGTACTTACATCTCCAAGAAGCAATTAAGCCACACAAGTCACCTCCCTCTTAAACCAAAAAGA
AAAGAGTCATGCCCACTCTAAAAGGGTGTGATGTCAAAAGGACAGGAAGGAGAAAAACAGAATA
TAGAATAAAAGGACAACTATAACCAGAACAGAGTTGCATGGGCACATGACAGCCTTGATTAATT
TACAGTCTAGCCTCAAACATACTTGTAAGAAGACATTTCAGCTTGTGACTTCTCCAATTCTTTC
TCCAGCTTAAGCTCATTAGATCTTAGACGAAGTGCCTACAAAATATTTTAAACAAAAATATAAA
GAGCAGAAAAGATAATCTATCTCATTAACAAATTTAAAAAAGAAAAAAGATCTGACCGATAAAA
GAGTCTCAAACAGAATGGGAAAAATAAAAAGAAAGAACAGGCACAAAAGTGACTGTTCATATTT
TGCTGGCAACACGAAAAAGGAAAAACGAAAAAAAGAACCAACATCCACTTACCCAAAAGGAACA
GGAAAACACTGGTTTGACATCTCAAATCCGACTTATAGCTCAAAACCAAACAACTGATGGTGAA
TACAGAGTCTATAATTCCTTATCTCACGGATCAATCTGGTTAACTTATTTATACACTCGACTCT
CACTAACTTATAATTTTAAAATGTAAATGACATTACACTGATTCAATCTATGATATATGGTAAT
CAAGTTGAACAACTTTCAAATTTAAATGTGAAACCAGTAACAAAGAGGATAACTACATGTAGGA
TTAAAATTAATAAACTCACTACATGCCTGACAATTATTCTGGTATAGACATTCCTACGAAATTA
TTTTGGTCAACAGACGAGAATACTGCATTTAATTACCTTCTCTTCCAAGCCAATCACTTCAGAA
GCCAATAACTTGGCACGCTCATCAGCAGCATTACATTCCAATTGTACATTCGCATATTCCATTT
TCACGGCTTCAAGCTCACTCTGGTTTTCATTGAATTCAACCAAGAAAGCAAATCACATACATCA
AACTAAAGAAATACTGATAACGACTGACTCATCCAGTCATCTAATTACAAAAATTGATAGAAAG
AAAGAAGAACGTGACTTTCCATGTATATATGACAACTCATCTAAACTAATTCCAATAAATAAAA
TTAGTACAACATACAGTTCCAGAAACCTTGTCCAAACAATCCTAGAAATATCTGTAATCGGAGT
TTAGATGATCAAATACATCTTTTGATAAGCGACGTGATTAATTACATCCTTCAACAGGATTTTA
TAGACACCTAAACAAGTATGCCTCGGACAAAATTTAAAACAAGTGAACCAATTATAATCAGTTA
GAGAATCCGTTACCACTTGCCAGACCAAATGTCAGACAATGAGATGGTAAAAATAAAGACAGAT
CAAAGAAAAGGACAGAACCCAGCCTTTAGGGTTTAATCATAAATGGATTTTTTAGGAGGCCAAT
TTGAGTAAGGAAAAGTAACAAATTGATAAAGACTCTTTGGGGTTCATTTTAATTGTTGGTCTTG
ACTGGGAAAATAGGTTAAGAAAGAAAGAGAACTTATCAAAAGTATCCTTAGAACTTATGACTAA
AAATATCACATAGCACTTCTATGGCTAAAAAAGCATTTTAAGTACGGTTAAAGCAAGGTTCCAT
CGTTGCGTGACAAATGGGAAATTTATGGAAGGTTACAATCCATACCACAGAATGGAAAGTTCAA
AATTAAAAAGTTTCCGGATACAGAAAGAGAGTAAACTAAAGATGTGGGTGATGTACAAAAATCA
CATTTGAATCGTGTGATCTTAAACATGTTATATGGGATATTGGAAATAACATGTTACTCCCTCG
TTTCAATTTGTTTGTCTGGTTTTGGCTTGGCATGGAGTTTTAAAAAGTAAATAAGACTTTTAAA
TCTTTTGATCTTAAACTAAAGATATGTTGAATGTACCAAAATATCCTTTAGTCTAGTGTTCTTA
CATGGCATGTGGAAAGTTCGGATTAAAGAGTAGGAAAGAGACATTCTTTTTTAAAGGGACTAAA
AAGGAAGCAGAACAAACAAATTGAAACACGAGGAGCACTAAATATAAAAAGTGATATTCTTTTG
TAAGAGACTTAAAAGGAAAGTAAGATACATAAGTAGTACTATTGCACACACCACAGTAAGAAAA
AAATAAGCATGCTGTAAAGAAATGGAAGATCCAGATATGTATTGCTTCATCTTCTAACTTTACG
TAAAAGTTAGCAATTCATGTCTATTTAGAAGACAAAAAATGTCTTTCAACTAGTTCTCTTCCAC
TCATTATAGTGCCAGGTGTTAATGTTTTACGAAGTCACATCAACAATCCCAAAATGAATAGACC
AGTAATATTTCTTAATAAATCATAGAGAACAAAACAAAACTTTAAGAGGTGCTGGATGAGAAAT
AAATGCAAGTCCTTACAAAATTGATAAATAAATCCTAGTCATCATATACAACTTCCAAAAGTAC
AAATATGTTGCAGAAACAGAACATCCAGAAGTGCCACAAGAGTTTACAAAAGGAAAATGCAGAT
TAGGTAATACTGTATAGCTAGGGGTAAGGAGCAAGATTGTGCAAACTACAAACCAGATGGGCTT
TAATCTCCTCTTGCAACCTCTCCATCTCAGCTTTTAGTTGGCCAACAAAACTTCCCTGCAAAAG
AAATACAGCAGTTCACTTTCATAAGGACACATCACTAAAAAAAGTATGAAGAACTTCAAGGAGA
GGCCTGCCATATGAACATGTCATGTAAATCTATAAAAAAAATAAGAAACAAAAGCACACGTAAG
AACTACGGCAGAACTAAAAGGAGAATGTAACTCATAAGTTGATGTGGACTCCTACTTAGTGTTG
CACACCTAGGAGCAGCGCACTTTGGGATGAGGAGGAGCTATTATCATCCATCTTTTTCCAAATT
TTATGATCAACACTTCTTTACACCACTTAGTTTCAATAGGTAACTAAGTAATTTTTTTTAGGCT
GGCTAGGTAACTAAGTAATTGCTCAGCTATGTAACACCGGTCCTTATTCTGTGTTAGTACCTAA
CAACGGTACAATAATCCTTTGATAATAAATCTAGGATTTACAACAAATGCAGGAAAAGACCAGT
AATAAAATAATCATTAGATACGTCTACCAGAAAACTAAGAAGATGACATGTAATTGTTTAGTAA
TGCATTATGATTAACAATAAAAATGCAAAAAATAATTGCTGTAAAGATTATCATCAGAAGAAGT
CGGTTAACTTTTTATAGTTTTGAAAAAATGCATATTTACGAACAGCAGTATACCTGTTGATTAT
AACTATCTGTCAAAGTTGAATTTTCAGCCGCCAGAGACTCTGCTAGAGTTCGCGAAGCCTCAAG
AGCACGTTGTAGAGAGAACTTCTCTTGTGTTAAATCTTCAATATG
Conservation Information
Conserved circRNAs NA
PMCS 0.161906009
Functional Information
Coding potential Y
Potential coding position 70471357-70467557(-)
Potential amino acid sequence MERLQEEIKAHLSELEAVKMEYANVQLECNAADERAKLLASEVIGLEEKALRLRSNELKLEKEL
EKSQAEMSSYKKKIASLEKDRQDLQSTIDALKEEKKLLQSKFLIASANGKSVDPSRNMPTKIDV
STSTEDLREDNIASGTINDTNLVGIDGPTTSSLPDFGQFSLGSLSPAIPPDQIRMIQNINTLIS
ELALEKDELTKALSVESSQCSTLKHIEDLTQEKFSLQRALEASRTLAESLAAENSTLTDSYNQQ
GSFVGQLKAEMERLQEEIKAHLSELEAVKMEYANVQLECNAADERAKLLASEVIGLEEKALRLR
SNELKLEKELEKSQAEMSSYKKKIASLEKDRQDLQSTIDALKEEKKLLQSKFLIASANGKSVDP
SRNMPTKIDVSTSTEDLREDNIASGTINDTNLVGIDGPTTSSLPDFGQFSLGSLSPAIPPDQIR
MIQNINTLISELALEKDELTKALSVESSQCSTLKHIEDLTQEKFSLQRALEASRTLAESLAAEN
STLTDSYNQQGSFVGQLKAEMERLQEEIKAHLSELEAVKMEYANVQLECNAADERAKLLASEVI
GLEEKALRLRSNELKLEKELEKSQAEMSSYKKKIASLEKDRQDLQSTIDALKEEKKLLQSKFLI
ASANGKSVDPSRNMPTKIDVSTSTEDLREDNIASGTINDTNLVGIDGPTTSSLPDFGQFSLGSL
SPAIPPDQIRMIQNINTLISELALEKDELTKALSVESSQCSTLKHIEDLTQEKFSLQRALEASR
TLAESLAAENSTLTDSYNQQGSFVGQLKAEMERLQEEIKAHLSELEAVKMEYANVQLECNAADE
RAKLLASEVIGLEEKALRLRSNELKLEKELEKSQAEMSSYKKKIASLEKDRQDLQSTIDALKEE
KKLLQSKFLIASANGKSVDPSRNMPTKIDVSTSTEDLREDNIASGTINDTNLVGIDGPTTSSLP
DFGQFSLGSLSPAIPPDQIRMIQNINTLISELALEKDELTKALSVESSQCSTLK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zuo et al., 2016