Plant Circular RNA Database

Detail information of Os02g0601800_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0601800_circ_g.1
					
						ID in PlantcircBase
						osa_circ_015350
					
						Alias
						Os02circ17539
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 23550491-23554226  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ui-circRNA							
									
						Identification method
						SMALT, Segemehl
					
						Parent gene
						
							Os02g0601800						
					
						Parent gene annotation
						
							Bromodomain containing protein. (Os02t0601800-01);Similar to Kin
ase-like protein. (Os02t0601800-02);Bromodomain containing prote
in. (Os02t0601800-03);Similar to Kinase-like protein. (Os02t0601
800-04)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0601800_circ_g.2 Os02g0601800_circ_g.3 Os02g0601800_circ_g.4 Os02g0601800_circ_g.5 Os02g0601800_circ_g.6 Os02g0601800_circ_g.7 Os02g0601800_circ_g.8 Os02g0601800_circ_g.9 Os02g0601800_circ_g.10 Os02g0601800_circ_g.11 						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0601800-03:7
Os02t0601800-01:7
Os02t0601800-02:2
Os02t0601800-04:3

General Information
CircRNA Name	Os02g0601800_circ_g.1
ID in PlantcircBase	osa_circ_015350
Alias	Os02circ17539
Organism	Oryza sativa
Position	chr2: 23550491-23554226 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ui-circRNA
Identification method	SMALT, Segemehl
Parent gene	Os02g0601800
Parent gene annotation	Bromodomain containing protein. (Os02t0601800-01);Similar to Kin ase-like protein. (Os02t0601800-02);Bromodomain containing prote in. (Os02t0601800-03);Similar to Kinase-like protein. (Os02t0601 800-04)
Parent gene strand	-
Alternative splicing	Os02g0601800_circ_g.2 Os02g0601800_circ_g.3 Os02g0601800_circ_g.4 Os02g0601800_circ_g.5 Os02g0601800_circ_g.6 Os02g0601800_circ_g.7 Os02g0601800_circ_g.8 Os02g0601800_circ_g.9 Os02g0601800_circ_g.10 Os02g0601800_circ_g.11
Support reads	2
Tissues	leaf
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0601800-03:7 Os02t0601800-01:7 Os02t0601800-02:2 Os02t0601800-04:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAGGTGGCCGCCGGCTCGAGACGCCTCCCCGCCTTATCCTCTTTTTTTTTTCTCTTTTTTCTTC
TCTTTTCTTTTTCCTCCTCTCGAGTCGAGCCGTCTCaaacctggctgagaatcccctgtgcctt
aacaatcacatcagcataacgactcctaaggagggctgctcttaagagcttgtctggggagact
tgcctgtc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AAACCTGGCTGAGAATCCCCTGTGCCTTAACAATCACATCAGCATAACGACTCCTAAGGAGGGC
TGCTCTTAAGAGCTTGTCTGGGGAGACTTGCCTGTCGGGTTTTGAATTCTCCCCTAAAGTTTCA
TAGGGAAAGGATCAGATGATCCAATCAGCTTAATGCACTGAGACCCCTTAATGGCCTCATATGT
ACTGCTTGCAAATTCATGCTTACCCTCTGGGGCAGGCTTTGACTCGTTATCCTGCTCACGGAGC
TCCACATCATCAGCAGGACCTGTGATTTTGAAAGTTGTAAGAGCATTAAGCCAAAAGCTCATCC
AACTGCCACATGAAACTACAAACTTGTGCTGCTGTGACGATTAAGGTGCATTTTGATTTCTAAA
GGTAATTTTTTTGTAGATTTTAACCCAAAACTTGGTCAAACTACAATTACATTTAGTGCATAAA
ACATACCAATAGATTTATATTTCAAAGAGTTCTCACACTGATATTATGCAGGTGCTTATTGTTG
AATACTTTTTCAAATCAAAATAAGCCTTAAGAAGACGTGGGGAGGTAGTAGAACAGAAAGGGCA
CAGGAATCTTACGGATGGCATCGACTGGACTTATAACATCACTCTTTTCTTGCTCCACCAGTTG
TTCAGATCTCTTACTTCCCTAAATTATATAGATGACAACTATTTCAGTGCAATAACACGGAAGA
AAAGGAAAAGTTGTTTCGATGAGAAGAAAAAAGCAACCTTGACAAAATGATTAAGAGGGATAGA
TATCACATTCAAAATTGAGCCTAAATTTCTCAAAGTACCACAGTAATAGATTATTTAAACGAAC
ATGTCTGTTTCTGACCAAATTAGACAATAAGGGTATATTAAATTAATATGAGAGTCAGCTTATA
CAGTATGCAGGGGCTGATGTCTGATTATAGATGCATAGCAATCAACCGGCCAGAACAAAATATT
CACAATTTTTCATCAAGCACCCAATGACAAATAGCCAAAATACCTTCGGCTTTCCTGGGCTACC
ACCTTTTTCTTGTTCGCTTTCACTGTCACTGCCCGACTCAGAATCTGCATTATTGGAGTAAATG
TGATTGAGGACACCTCAAGACAAACTCATGATAAAGGAAGGCTTATGACAAGTGGGACTAGCAG
AAGTCCAAACAGGAACAATTACGCAAACATTTAGCCACACAAACAAGATATGATGCATGTATTG
CTATTCTGAAGATAAGATAAGATTGTTGCAAATTAGCACAAGGGTAAATTGCAGGATGGTATCC
TGCTTGTTCGTCAGTTAACGATATGAATAACAGTAACCCCAGTTAAAGTTTCTATAATACTGAT
AATCTAGTCCCCCAGAAGATCAAAGAAAGAGGGAATATTGTTGAATGCATGAGCATGCATACTG
ACTAGTGGGCATCTAATGGTACAGATGCACCTACAGTGAAGTATAATTGTGCGTACTTCTTGTT
CAGTGCCTCGTTAGCTAAACTCAACTAAACATCTACTCAAAAGTAATTAGCTTCAAGCTTAAAC
GTCACAGAAGTTAATATAATGAAATACACAAGTGTTTGAAGTAACCAGATCATTCTTGCAAAAA
CATATTTGTTTACAAGGACATATATCATACTAAAGAGAGTATGTAAGCACAGAGGAGCACAGAC
CGCTGGAAGAAGATCCAGAGTCACTGCTGGAACTACTTGGGCTACCACACTTGTTAGGATTGTT
GTGTGCATCTTTTTCTATCAATATAGGGGATGCATTCCCGCAAATATCTACATCCTCCTCAACT
GGATCACCACCTGCAGAGAAAAAGAAGTTGTAAGAGTACTGTGATGTTGCATAAAACTAAGCAT
TAGCAAAGGACCAGGGAAAAAAACCTTTGCAGGGATTTGTAGAGGAGTGGCTAAGGCCAGATAC
ATTAGCAGCCTCATTCTCAGAAGGCTCAGATTTTGCCTGCTGGCTCTGCTCTCTCTCTTGCAAA
TACTTGTCAACATGTTTCTTCAACTCGAATAGTAGGTCATCACTGACAGCATGGATATCAATCT
CTATCTCTCCATCACCAAGCTGATCTGTGTTGTTGTCAATGCATTGCTGCAACAAATCAATGAT
GTGTGAAGGTACCTCCGGATCCTCAGACAAAGATGCCAAACAGTTCCCAAATGATTCTTTCTCC
TCGAATGTCATTTTTGGCTTTACAGACTCTGTTGGTCTAACAGACTCTGTTGGCCTCACACACT
CTGTTGACACCTCACTGCAGTCCACAGGGGGAGTCTTCCTCCTCTTTGAGTCAGCCCTGTCAAC
CTCGACGTGCGCCTCTGTGGCAATGGAAGCCAGCTTCTTTTCAATTGTCCTCCATCTTGATTCA
AACATCTTGTTTAGTTGAATGGCATAATCATGCACTACATGCCCACGAGGATTGTAAGTCATCG
CATTTGAAAAGGTCAGCCGTACATCGGCTGCAAATTCAGATGGACTCGTGTAGGAACCAGAGTC
AAGCTTATTCCTGATAGTTCCAAGATCCATCGGTTTCTTGATGATTTGAAAATAATCTGGAATA
TTCAGCTTAACAGCATCAACCGGGGAGTCGAATATGTTACTACATTTCTGAGTCATCAGCTTTT
TCAGAATAGCATCGCATTGCTTAAAAATCGCATCCTCAGTCAACACCGTGGAAGCCTCAGGTCG
GGGCTTTGTAGGCAAGAAACGCCCCTTGGCACCACGGACCACATGGTTACCACGCTGTCCCTTC
TTACCTCGAGGGGCAGCCGAGGACGAGAGCGCGGGAGCTCTATTGACAGGGACAGGGACAGCAA
ACTCCGGCTTCTTGAGGAGATTCCGGACCGAATCAAGCTCTGTGCGGAACCTCTTCCGGAGATG
CCTCCTCTCGGAGGAGGACATCTTGGCTGGGACGAAAATCTCCCGCTTGACATCGAAGCCGTCG
CTGTTTAGGCTGATGCACTTGCGCTTGGGGGCCGAAGAGTCCTCGGAGTCAACACGAACGGGGC
TGCCTGCCGCGCCCTCCGACTCGCCAACGGTCTCCGCGTAACCCCGTGGCGCCGCTGACGCCAT
GCCCCGGAACGCCATTTCATCGTAGCCCCGCTTAATCTGCCTCTGCTGCCCAAACTCCATGAGG
ACCGTCGGTGTCATGTGCCCGGGCGCCAGATCTGTTCACCATTGACAACCATAAGAGACCCAAG
ATTCAGTCACGCGGAAGGGAAACTTGAACTTAGCGGAATCAAATGCCAAATTTGAACTTCCCGT
ACAGCTTGATGTAAGAGAACAACAGAAACACAAAACGTATTCAAAAAGTTCCCTCCAAAAACCC
TAATCCCACACCTAGACCTAATTCGAATTCGAACCCCACCCCCCGCCACGCACGAATCCGACAC
CGCGACCCCCGAATCCTCCAATTCGCGCCCAGAACCTAACGGCACGCGAAACCGAAGAAACCCC
AAGAGAAAAACATCCCCGAAAATTCGAAACGGAGACGGGGGGTCGCGAGAACCTGAAGAAGCCG
GATCTGAAGAGGGCGAAACCCTAGGCCGGGGATCCGCGGCGGACGGCGGCCTCCTCCTCCCGTG
CGGCCGCCGGCGAGCCGGATCTGCTCCGGAGACGGGCGGATCTGAGGGTCGCGAGGTGGCCGCC
GGCTCGAGACGCCTCCCCGCCTTATCCTCTTTTTTTTTTCTCTTTTTTCTTCTCTTTTCTTTTT
CCTCCTCTCGAGTCGAGCCGTCTC
						
					

			
		

Sequences
Splice junction sequence	GAGGTGGCCGCCGGCTCGAGACGCCTCCCCGCCTTATCCTCTTTTTTTTTTCTCTTTTTTCTTC TCTTTTCTTTTTCCTCCTCTCGAGTCGAGCCGTCTCaaacctggctgagaatcccctgtgcctt aacaatcacatcagcataacgactcctaaggagggctgctcttaagagcttgtctggggagact tgcctgtc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AAACCTGGCTGAGAATCCCCTGTGCCTTAACAATCACATCAGCATAACGACTCCTAAGGAGGGC TGCTCTTAAGAGCTTGTCTGGGGAGACTTGCCTGTCGGGTTTTGAATTCTCCCCTAAAGTTTCA TAGGGAAAGGATCAGATGATCCAATCAGCTTAATGCACTGAGACCCCTTAATGGCCTCATATGT ACTGCTTGCAAATTCATGCTTACCCTCTGGGGCAGGCTTTGACTCGTTATCCTGCTCACGGAGC TCCACATCATCAGCAGGACCTGTGATTTTGAAAGTTGTAAGAGCATTAAGCCAAAAGCTCATCC AACTGCCACATGAAACTACAAACTTGTGCTGCTGTGACGATTAAGGTGCATTTTGATTTCTAAA GGTAATTTTTTTGTAGATTTTAACCCAAAACTTGGTCAAACTACAATTACATTTAGTGCATAAA ACATACCAATAGATTTATATTTCAAAGAGTTCTCACACTGATATTATGCAGGTGCTTATTGTTG AATACTTTTTCAAATCAAAATAAGCCTTAAGAAGACGTGGGGAGGTAGTAGAACAGAAAGGGCA CAGGAATCTTACGGATGGCATCGACTGGACTTATAACATCACTCTTTTCTTGCTCCACCAGTTG TTCAGATCTCTTACTTCCCTAAATTATATAGATGACAACTATTTCAGTGCAATAACACGGAAGA AAAGGAAAAGTTGTTTCGATGAGAAGAAAAAAGCAACCTTGACAAAATGATTAAGAGGGATAGA TATCACATTCAAAATTGAGCCTAAATTTCTCAAAGTACCACAGTAATAGATTATTTAAACGAAC ATGTCTGTTTCTGACCAAATTAGACAATAAGGGTATATTAAATTAATATGAGAGTCAGCTTATA CAGTATGCAGGGGCTGATGTCTGATTATAGATGCATAGCAATCAACCGGCCAGAACAAAATATT CACAATTTTTCATCAAGCACCCAATGACAAATAGCCAAAATACCTTCGGCTTTCCTGGGCTACC ACCTTTTTCTTGTTCGCTTTCACTGTCACTGCCCGACTCAGAATCTGCATTATTGGAGTAAATG TGATTGAGGACACCTCAAGACAAACTCATGATAAAGGAAGGCTTATGACAAGTGGGACTAGCAG AAGTCCAAACAGGAACAATTACGCAAACATTTAGCCACACAAACAAGATATGATGCATGTATTG CTATTCTGAAGATAAGATAAGATTGTTGCAAATTAGCACAAGGGTAAATTGCAGGATGGTATCC TGCTTGTTCGTCAGTTAACGATATGAATAACAGTAACCCCAGTTAAAGTTTCTATAATACTGAT AATCTAGTCCCCCAGAAGATCAAAGAAAGAGGGAATATTGTTGAATGCATGAGCATGCATACTG ACTAGTGGGCATCTAATGGTACAGATGCACCTACAGTGAAGTATAATTGTGCGTACTTCTTGTT CAGTGCCTCGTTAGCTAAACTCAACTAAACATCTACTCAAAAGTAATTAGCTTCAAGCTTAAAC GTCACAGAAGTTAATATAATGAAATACACAAGTGTTTGAAGTAACCAGATCATTCTTGCAAAAA CATATTTGTTTACAAGGACATATATCATACTAAAGAGAGTATGTAAGCACAGAGGAGCACAGAC CGCTGGAAGAAGATCCAGAGTCACTGCTGGAACTACTTGGGCTACCACACTTGTTAGGATTGTT GTGTGCATCTTTTTCTATCAATATAGGGGATGCATTCCCGCAAATATCTACATCCTCCTCAACT GGATCACCACCTGCAGAGAAAAAGAAGTTGTAAGAGTACTGTGATGTTGCATAAAACTAAGCAT TAGCAAAGGACCAGGGAAAAAAACCTTTGCAGGGATTTGTAGAGGAGTGGCTAAGGCCAGATAC ATTAGCAGCCTCATTCTCAGAAGGCTCAGATTTTGCCTGCTGGCTCTGCTCTCTCTCTTGCAAA TACTTGTCAACATGTTTCTTCAACTCGAATAGTAGGTCATCACTGACAGCATGGATATCAATCT CTATCTCTCCATCACCAAGCTGATCTGTGTTGTTGTCAATGCATTGCTGCAACAAATCAATGAT GTGTGAAGGTACCTCCGGATCCTCAGACAAAGATGCCAAACAGTTCCCAAATGATTCTTTCTCC TCGAATGTCATTTTTGGCTTTACAGACTCTGTTGGTCTAACAGACTCTGTTGGCCTCACACACT CTGTTGACACCTCACTGCAGTCCACAGGGGGAGTCTTCCTCCTCTTTGAGTCAGCCCTGTCAAC CTCGACGTGCGCCTCTGTGGCAATGGAAGCCAGCTTCTTTTCAATTGTCCTCCATCTTGATTCA AACATCTTGTTTAGTTGAATGGCATAATCATGCACTACATGCCCACGAGGATTGTAAGTCATCG CATTTGAAAAGGTCAGCCGTACATCGGCTGCAAATTCAGATGGACTCGTGTAGGAACCAGAGTC AAGCTTATTCCTGATAGTTCCAAGATCCATCGGTTTCTTGATGATTTGAAAATAATCTGGAATA TTCAGCTTAACAGCATCAACCGGGGAGTCGAATATGTTACTACATTTCTGAGTCATCAGCTTTT TCAGAATAGCATCGCATTGCTTAAAAATCGCATCCTCAGTCAACACCGTGGAAGCCTCAGGTCG GGGCTTTGTAGGCAAGAAACGCCCCTTGGCACCACGGACCACATGGTTACCACGCTGTCCCTTC TTACCTCGAGGGGCAGCCGAGGACGAGAGCGCGGGAGCTCTATTGACAGGGACAGGGACAGCAA ACTCCGGCTTCTTGAGGAGATTCCGGACCGAATCAAGCTCTGTGCGGAACCTCTTCCGGAGATG CCTCCTCTCGGAGGAGGACATCTTGGCTGGGACGAAAATCTCCCGCTTGACATCGAAGCCGTCG CTGTTTAGGCTGATGCACTTGCGCTTGGGGGCCGAAGAGTCCTCGGAGTCAACACGAACGGGGC TGCCTGCCGCGCCCTCCGACTCGCCAACGGTCTCCGCGTAACCCCGTGGCGCCGCTGACGCCAT GCCCCGGAACGCCATTTCATCGTAGCCCCGCTTAATCTGCCTCTGCTGCCCAAACTCCATGAGG ACCGTCGGTGTCATGTGCCCGGGCGCCAGATCTGTTCACCATTGACAACCATAAGAGACCCAAG ATTCAGTCACGCGGAAGGGAAACTTGAACTTAGCGGAATCAAATGCCAAATTTGAACTTCCCGT ACAGCTTGATGTAAGAGAACAACAGAAACACAAAACGTATTCAAAAAGTTCCCTCCAAAAACCC TAATCCCACACCTAGACCTAATTCGAATTCGAACCCCACCCCCCGCCACGCACGAATCCGACAC CGCGACCCCCGAATCCTCCAATTCGCGCCCAGAACCTAACGGCACGCGAAACCGAAGAAACCCC AAGAGAAAAACATCCCCGAAAATTCGAAACGGAGACGGGGGGTCGCGAGAACCTGAAGAAGCCG GATCTGAAGAGGGCGAAACCCTAGGCCGGGGATCCGCGGCGGACGGCGGCCTCCTCCTCCCGTG CGGCCGCCGGCGAGCCGGATCTGCTCCGGAGACGGGCGGATCTGAGGGTCGCGAGGTGGCCGCC GGCTCGAGACGCCTCCCCGCCTTATCCTCTTTTTTTTTTCTCTTTTTTCTTCTCTTTTCTTTTT CCTCCTCTCGAGTCGAGCCGTCTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.161126285

Conservation Information
Conserved circRNAs	NA
PMCS	0.161126285

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015

circRNA

Detail information of Os02g0601800_circ_g.1

Address

Any questions?

Supported by