Detail information of Zm00001d038755_circ_g.1


General Information
CircRNA Name Zm00001d038755_circ_g.1
ID in PlantcircBase zma_circ_005321
Alias stemctrl_test_circ_002647
Organism Zea mays
Position chr6: 163931740-163931857  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d038755
Parent gene annotation Carnitine racemase/ catalytic
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues stem
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered Zm00001d038755_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCCCTCCCGCCCTACTTCATGGCCGTGCTCCGCGCCAAGATCACCGCCGCCAACGCGctacc
gcatcatgcgcggggaccgcggagtgctctacatgagcgaggtcgacatcggcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTACCGCATCATGCGCGGGGACCGCGGAGTGCTCTACATGAGCGAGGTCGACATCGGCCTCCCC
CTCCCGCCCTACTTCATGGCCGTGCTCCGCGCCAAGATCACCGCCGCCAACGCG
Conservation Information
Conserved circRNAs NA
PMCS 0.225988136
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018