Detail information of Zm00001d006373_circ_g.1


General Information
CircRNA Name Zm00001d006373_circ_g.1
ID in PlantcircBase zma_circ_001182
Alias circ508
Organism Zea mays
Position chr2: 206000319-206005153  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d006373
Parent gene annotation E3 ubiquitin protein ligase RIN2
Parent gene strand -
Alternative splicing NA
Support reads 10
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d006373_T017:5
Zm00001d006373_T014:3
Zm00001d006373_T004:4
Zm00001d006373_T003:3
Zm00001d006373_T013:5
Zm00001d006373_T008:5
Zm00001d006373_T011:4
Zm00001d006373_T001:5
Zm00001d006373_T012:3
Zm00001d006373_T010:4
Zm00001d006373_T018:5
Zm00001d006373_T005:4
Zm00001d006373_T020:4
Zm00001d006373_T007:5
Zm00001d006373_T009:5
Zm00001d006373_T006:5
Zm00001d006373_T019:5
Zm00001d006373_T002:6
Zm00001d006373_T016:5
Zm00001d006373_T015:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGCTTATAAGATTTCTGTAAATCAAGGAAGTCTGCACCACTTTCCATTAGATGCTGCTGCCA
GATGTCAAATAACTGAAACCCATGCACCATAATAGAcctccaaacagcatctgaagggttctgc
tgttcaacaggatgttcattaccaggaactctctgctgattcatccccatagtaagttgttccg
caattcgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCCAAACAGCATCTGAAGGGTTCTGCTGTTCAACAGGATGTTCATTACCAGGAACTCTCTGC
TGATTCATCCCCATAGTAAGTTGTTCCGCAATTCGCTGAACATTTGCTACCTCCGCAGTTGTAG
ACCTTCTTTGCCCTTCAGATGACAATAAGAGCGGTCTCCGACAAGTTGGACAGGAGTAACCTTC
CATTAGTCCTTGATCCAACCTAGACATAACAATGTTATTTCAGGATAAAACAAAAATTGTGATG
ATTTCCATGTAGATACTGCATACAATCAATGCTACTAATTCAGCTAACGCCCCTTTCTTTAGAG
GGAAAATCTTCCAACACTACTACTTCCATAGCTCAAGCTACTAATTCATAATTTCCCCTGTTCA
TATGCATACAAACTTCAATTTCATTGAGATAAAATGGATCATATCAATTATGCCCCAGCCACCC
TATCGGAGGCTGGTGAGAATCCAATCGAGTCATCAATGTTTTGGCAATAAAATTTGACACCTCT
AGCATATTGCCATTACATCGGCACAAGGAATTGTACGAGGATGACCAAAATTCATGGGCACGCC
AAAATTTCGGTAGCAAACTAAGCTACATGCATAGACACTAGGATTACCAACTTTTTGTGTATTA
AGTTAGCCCAACCAAAAATACCCTGCCCCGTTTGGATCCTTGGAATTGAATTCCATTCTAATAA
TAGTAATTTAGACACGTTAATTAAGCTAATATAGTTTTATGCAAAATATATTTATATACTATTA
TTAGCAAGATGTTGGAGATATTTATGTGCTACATTTTTATTATAGATGAGCCGAAAAGTGTCCA
ATAAGTTGCAGAGTATAAACATATTCTACTCATACATAAAATTATTTCTCATCCTCCACCACAT
GAATTTGAGATAGACTTATATATGAACTTTGGAAAGTGGTGGAATATGTTCCTTTATTAAGTAA
ATTCTAATTCCTCCAAAATGAATGGATCCAAACGGCCCCTAAAGTTCCCTTTCTTCACATATCT
CATTACAACAACAAAATTAAGAATCACGTCAGGAGCACTGGTCACAGCATCAGCTAGCCAATTA
CAGGAATATAAGCAGCACTTCCTCAAGCAAACAGCAGGAGCATCATTTCTGGAGCATACAGAAT
AATACTCCCTCCATTCCAAATTACAGGTTGTTTTGGCTAGACATAGCATAGATCTAAGTGCACA
GCAAAACCTATGTACATTGAAAAGCCAAAACCGCCTATAATTTAAGATGGAGTAAGCTGAAAGG
GTTGTATTATGAACATAACCTATTAACTGTACTGCTATCAAGAGATAATTACACTATATATGAA
AAGTAAGGGCATACCATGACCGCAAACAAGCTAGATGAAATAGATGGTTGCATGACAACTTTTT
AGCTCGACCCATTGGTCCCTGCAGGTTGCAGGAGCAAGAAAAGGGTTCAGATATTTGAGGACTG
AAGCCCCATGTGATTCTATAGATCTAGGTAATTGTTTACCCTGCAGATGGCACACTCATCATCA
TATGCACAAATTTCATCATACGTAGCATCTGGAAGTGCTCCATCGAGTGAACTAAGTGCCTTCC
GTAACTTGATGTGAGCTTTAATCCTCTTCAAAAAGGAAACTATAAGAGCCTGGAAATGTTTCAA
ATGAATGGTATCAACACACTGTACATATAAAAATATTATGTAAATGTCAGAATAATATTCACTT
GTTAAGTAAAAGGTCACTTACACGCGAGTTCAATAAGAGAACTGCATCAACCAGATGAAACGCC
ATACCACGAAGCCAAAATATCATCGAGTAATGACCAAGTGACATCAACAAGCTTATCAAATCAA
TGGCAAAACCAAAGTTCCTAGTAAGCTTGCCCCTCCATTCAGAAAAAGATCCTGCAATTACGAA
GAAAGACCAGATCCTGGTGAAGTGATAAGAAAAAATCAAGTGGATGAACCGCAATTGAACTGAC
ATGCTCCAATAGACAATGAAGCACAGTTTACAGACAGATCAAACAAATAAAACCAGTAACAAAT
GTGCAATGAAAGAGCTGATCTTTTTTAAAATGTGTCCAACCATGAAAATGCCACCACATTGGCC
GCTGAGATGACCTCAGATAGCAAATGTGAATACCAATTGTTATTGCCTTTATATTTTTAAAGTC
AAGTAAAACTATAATATTCCCACAGTTTATAAAAGGTGGCTGTTTTAGTTTTGCCCGATCTTTG
GCCATCAATTTCTATAAATTAATATAGTTGTGAAAGGGCATCTAGCCTAGTGGTTAAGGGCTTC
CGAGTAGCACCTCCAAGTCCTGGGTTCGATTCCCCTAGGAGCAGGGGCGGATCCACATGGGGGG
CAAAGGGGGTCGTGCCCCCCCCCCCAATTTTTGGTACCTCTTATAGATAATGTTCATTTACTTT
AAGTATAGAAAAATAAATAGAAGTTTTAGGTAAACCAAATCAGTTATGTTCTAGGTCCCCTAGT
TGGATCAATTCAGTCCTCCTTCTCAGTACAGTCCTTGCATCCATCTGTTCGATCCCATTCTTTC
CAACGCCACATGAACCAATCTGTCTCGATGCCCCGTTTCTGACGCTGCCCACCTCTGTCACCTT
CCTGATGTGTGTTGTCGTCCAACCTTGACCCCCTTCCTGACGCCTAGGGATGAAAACGGTTTCA
GAATTTTTCAGTTTTTCGGAAATCGTTTTTGATTTTTTTTTCCGACCGGATCCAGCGGTAACGG
TATTTTTCGAAAACGGAAACGGTTATCAAAATTTTATGCTGGAATCGGTATCGAAATCGGTATA
ACGTTCTATCGACCGTTTTGTTCGGTTACCGATTTTAATCGAAATTTACCGAATTTATACCTCA
AAATTTTCCGAATCCAAAAATAAATTAGGTGGTCAAGGCCCACATTTCCTAGGCTAGACCAAGC
AACTACCGTGCTGCTAAACCTTCTTATATAGAAGAGCATGTGCCTCTTCTTAGCTAAGCAAGGT
GAGACAAATCACAGTAGTGTTGCATCTGTGCATAGCGCTACTGGCCAGAGCTGGGCAGGTGGGC
CATTGTTTGCTAGCCGAGGTGGGCTGCCTCATTCCTATAGCGTGCATGCGTGTCATGTGCGATA
TATGTAGAGAGAGAGAGACATAGTTTAAGTGTGTGTACATATATATTTATGTATATATAATATA
TTTATGTATACATACATAAATAAATAAATATGTGTGTATATGTATTTTTATGTGTATATATGGA
TATATATTGTGTATTGTACATTTGTACTTGTTTCTAATATCGAGTTGCTCGAGTGACGTACTAG
GCACTTTTTTTAATATAGTCGGAGCAAGAAAAGATTGAACTATGAGTCTGTGAAAGTGTGATCT
TTATGAATTTGTTATATTGTGAAGAATTGTGGACTTGTGATCTTTGCGATCTTTGTTGTATTGT
GAATTTGTTATATTGATATGTTTACCGGTCGTATTTTAGATTTCGATCGTTACTGGTGTATTTT
ACGTATCGAACTTTCGTTTCCAATGTTTCCGAAGTACCGACATCGTTTCCGTTTCCGGAGTTAC
CATTCCGATTTCGTTTCCAATAAAAAAATATGAAAACGGTAACGGTTTTGGTGTTTACCGATCG
TTTTCATCCCTACCGACGTCCCATCTCCGACAGACGGCGAGTTTAGCAAACCAGCGAGCGTTAA
TTCTCTGCCGGAGAGGTCGCTGACCCCGCCTCCTTCCTGATGGCCCCACACTTCGAGAAGATCA
ACAGACTAATATTTGAAAAGGTACACATAGTTTGGATTCGGTCAACAAAAAGTTAGCGGTATGT
TTGCTTCTTTTGTTCATATAGTTTTCAGGCTTGGTTAAAAAAATCCCCTCTTGTGCCCCATCCG
CTCTCGGGGTTACGATGTCATGTGCGCCACCCTCTAGTTGGGCCGTTGCAAAGTGGACGGTTGA
CGCCGGCCTATTAGTGATAGGGGGCGGGGTTCGGGGATTTTCTCGATCGGGACCATTGTTTCGG
TCGGACAGTTTTTCCCTCCCCGGCCGAGTTATTTTTAGATCATAAGACTTCGGCCTTTAGATCC
ACCATGAGAAATATTTTTGTAACATATAAATGCTTGACTTACGACAAAGCTAGAATTGCAAGCT
TTGTGAAATAGAGGGAGTAGTTCAGTAGCATGAAACAATTTTCAGATTGGAGTGCTCATATTTT
CAAAGCTGGCCTATATTTCAAAAAGTTATTGCAAGTTTAAGTTCAAATTTAAACTCCTTAACTG
CATGCATTGTAGGATGACGCCATTATTTAGTGGTATTCCTCTCATAATCATGAAGTTGAGAAAG
AATCAACCACAAGATTTGCAGATCAAATAACTTGTAAACTGTTAGAGTGGACGCACCAACCAGT
TCAACCCAAAAGCTTAAGCTATTGGGAGAAGGTAGGCAATCCACTTATACACTTCAATACCCAC
AGTCATGGGCAGCGCAAACTTAGAAATAAAGAGACGGAGGCACAAATTAAGCCTCTGTCTTGAG
AGTCGAGACACCATGCTCTGGTACCATGTTAGAGTGGATGCGCTAACCAGTTCAACCCAAAAAC
TTAAGCTGCTAGGAGAAGGTAGGCAATTCAGTTATACATTTCAACACACACCACATTAGTTAAT
TAACTGTAGTAACTAAACTCATAAGCTTATCAGGATGAGGAAATAGCAGTTTATCACCTGCTGC
TTGCTTATAAGATTTCTGTAAATCAAGGAAGTCTGCACCACTTTCCATTAGATGCTGCTGCCAG
ATGTCAAATAACTGAAACCCATGCACCATAATAGA
Conservation Information
Conserved circRNAs NA
PMCS 0.020113182
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b