Detail information of AT2G04880_circ_g.3


General Information
CircRNA Name AT2G04880_circ_g.3
ID in PlantcircBase ath_circ_012823
Alias 2:1719484-1719639
Organism Arabidpsis thaliana
Position chr2: 1719484-1719639  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G04880
Parent gene annotation WRKY transcription factor 1
Parent gene strand +
Alternative splicing NA
Support reads 1/1/1/1/1
Tissues root;leaf;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04880.2:1
AT2G04880.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGTTTGATATTGTGAATGATGGGTACCGATGGCGTAAATATGGTCAGAAATCAGTAAAAGGC
AGCCCATATCCAAGgaagaaaggagggaacattgagctgagtccagtggagaggtcaaccaatg
attcacgcattgtggttcacactcagac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 156
Transcript exons: 1719484-1719639
GAAGAAAGGAGGGAACATTGAGCTGAGTCCAGTGGAGAGGTCAACCAATGATTCACGCATTGTG
GTTCACACTCAGACTCTGTTTGATATTGTGAATGATGGGTACCGATGGCGTAAATATGGTCAGA
AATCAGTAAAAGGCAGCCCATATCCAAG

Genomic sequence GAAGAAAGGAGGGAACATTGAGCTGAGTCCAGTGGAGAGGTCAACCAATGATTCACGCATTGTG
GTTCACACTCAGACTCTGTTTGATATTGTGAATGATGGGTACCGATGGCGTAAATATGGTCAGA
AATCAGTAAAAGGCAGCCCATATCCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.384083598
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020