Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0131900_circ_g.2 |
ID in PlantcircBase | osa_circ_022963 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 1995132-1996835 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0131900 |
Parent gene annotation |
Similar to UDP-glucose:sterol glucosyltransferase (EC 2.4.1.173) . (Os04t0131900-01) |
Parent gene strand | - |
Alternative splicing | Os04g0131900_circ_g.1 |
Support reads | 1 |
Tissues | shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0131900-01:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.347894376 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1995163-1996778(-) 1996808-1995134(-) |
Potential amino acid sequence |
MLSLLTLQHMMTGASPDQALCQVGLIMLK*(-) MPGGINNVEITNETAGPSNLERSRTERRRQNNPADDPTKQLFDDKISLKKKLEMLNRIATVKDD GTVVVDVPSSLETSTTDGVAYDGYSDVTVEEPLDGADISVRPPMDIVILIVGTRGDVQPFIAIG KRLQDYGHRVRLATHANFKEFVLTAGLEFFPLGGDPKILAEYMVKNKGFLPSGPSEIPIQRKQM KEIIFSLLPACKEPDPDTGIPFKVDAIIANPPAYDDRGLPRSSTMPGGINNVEITNETAGPSNL ERSRTERRRQNNPADDPTKQLFDDKISLKKKLEMLNRIATVKDDGTVVVDVPSSLETSTTDGVA YDGYSDVTVEEPLDGADISVRPPMDIVILIVGTRGDVQPFIAIGKRLQDYGHRVRLATHANFKE FVLTAGLEFFPLGGDPKILAEYMVKNKGFLPSGPSEIPIQRKQMKEIIFSLLPACKEPDPDTGI PFKVDAIIANPPAYDDRGLPRSSTMPGGINNVEITNETAGPSNLERSRTERRRQNNPADDPTKQ LFDDKISLKKKLEMLNRIATVKDDGTVVVDVPSSLETSTTDGVAYDGYSDVTVEEPLDGADISV RPPMDIVILIVGTRGDVQPFIAIGKRLQDYGHRVRLATHANFKEFVLTAGLEFFPLGGDPKILA EYMVKNKGFLPSGPSEIPIQRKQMKEIIFSLLPACKEPDPDTGIPFKVDAIIANPPAYDDRGLP RSSTMPGGINNVEITNETAGPSNLERSRTERRRQNNPADDPTKQLFDDKISLKKKLEMLNRIAT VKDDGTVVVDVPSSLETSTTDGVAYDGYSDVTVEEPLDGADISVRPPMDIVILIVGTRGDVQPF IAIGKRLQDYGHRVRLATHANFKEFVLTAGLEFFPLGGDPKILAEYMVKNKGFLPSGPSEIPIQ RKQMKEIIFSLLPACKEPDPDTGIPFKVDAIIANPPAY(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |