Detail information of Os04g0131900_circ_g.2


General Information
CircRNA Name Os04g0131900_circ_g.2
ID in PlantcircBase osa_circ_022963
Alias NA
Organism Oryza sativa
Position chr4: 1995132-1996835  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0131900
Parent gene annotation Similar to UDP-glucose:sterol glucosyltransferase (EC 2.4.1.173)
. (Os04t0131900-01)
Parent gene strand -
Alternative splicing Os04g0131900_circ_g.1
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0131900-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGATCTTTCCAGATTAGATGGACCAGCAGTTTCATTGGTTATTTCAACATTATTAATCCCAC
CTGGCATAGTGCTTGATCTGGGGAGGCCCCTGTCATcatatgctggagggttagcaatgatagc
atccactttgaaaggaataccagtgtcaggatcaggctccttgcacgcaggtagcaaagagaat
ataatttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 708
Transcript exons: 1995132-1995302,1995397-1995508,1995650-1995892,1996654-
1996835
CATATGCTGGAGGGTTAGCAATGATAGCATCCACTTTGAAAGGAATACCAGTGTCAGGATCAGG
CTCCTTGCACGCAGGTAGCAAAGAGAATATAATTTCTTTCATCTGTTTCCTCTGAATAGGAATT
TCTGAAGGACCAGAAGGCAAGAATCCTTTATTCTTCACCATGTATTCAGCAAGTATTTTTGGAT
CACCGCCAAGAGGGAAAAACTCCAGACCAGCCGTTAGAACGAACTCCTTAAAGTTTGCATGGGT
TGCCAATCTCACACGGTGTCCATAATCCTGTAAGCGTTTGCCTATAGCAATGAATGGCTGAACA
TCACCTCTTGTGCCCACAATAAGAATAACAATATCCATAGGAGGCCTCACAGATATGTCTGCTC
CATCCAATGGTTCCTCAACAGTAACATCACTATAGCCATCATATGCTACACCATCAGTTGTACT
TGTTTCCAGAGAACTTGGCACATCAACCACCACAGTTCCATCATCTTTCACTGTAGCTATCCGA
TTTAGCATTTCGAGCTTCTTTTTTAGGGAAATTTTATCATCAAATAACTGTTTAGTAGGATCAT
CAGCTGGATTGTTTTGTCGACGCCTCTCTGTTCTTGATCTTTCCAGATTAGATGGACCAGCAGT
TTCATTGGTTATTTCAACATTATTAATCCCACCTGGCATAGTGCTTGATCTGGGGAGGCCCCTG
TCAT

Genomic sequence CATATGCTGGAGGGTTAGCAATGATAGCATCCACTTTGAAAGGAATACCAGTGTCAGGATCAGG
CTCCTTGCACGCAGGTAGCAAAGAGAATATAATTTCTTTCATCTGTTTCCTCTGAATAGGAATT
TCTGAAGGACCAGAAGGCAAGAATCCTTTATTCTTCACCATGTCTGCTCAAATATGAATATACC
AAATATATTAATCATCGTGACGTAGAAACTGAAAAAAAATCAACTATGTGAATACAAGGATTTA
TTTTCATACATTCAGCAAGTATTTTTGGATCACCGCCAAGAGGGAAAAACTCCAGACCAGCCGT
TAGAACGAACTCCTTAAAGTTTGCATGGGTTGCCAATCTCACACGGTGTCCATAATCCTAAAAA
AAACAGGTAATGGATAATCCTAGTCATACAGAAACCATGTATTTAGAAACATTAAGCTTGAGAA
GCAAAATAGTTCACCTGATGAGAGATAAAATAATGTGAAATTAACAAACAATGGTAGCTTTTGA
TCTAACCTGTAAGCGTTTGCCTATAGCAATGAATGGCTGAACATCACCTCTTGTGCCCACAATA
AGAATAACAATATCCATAGGAGGCCTCACAGATATGTCTGCTCCATCCAATGGTTCCTCAACAG
TAACATCACTATAGCCATCATATGCTACACCATCAGTTGTACTTGTTTCCAGAGAACTTGGCAC
ATCAACCACCACAGTTCCATCATCTTTCACTGTAGCTATCCGATTTAGCATTTCGAGCTACAAT
AAAATGTAAAATATCACAAAAAACTGTTGAACAACATCAAGCATCCAGATACAAAAGAGTACAT
CTGGCACTGAGTTCCTGACTATTCGAAGCTACCATGCAGTGTATCACAATACACAATTGTTGTG
AAAAAAAGGCTGAATTGGCTGCATAATAATCTGAATAATCAACTATTTTTCAATCAGTTGGAAT
GTTTCTCAAGTTTAATCGTAAAATAGACTTTACTCCCTAATTACAGTGAACTAATCTCTGATCT
CATGTAGTAGTGTTTGCTTTGGAGATGAAGCAGTGAAGCACAAAATACAACATGTCAAGCTTAG
CAAGTGCTGTTTTTAAGTGGTTATAACATGTCATAATTTTCATGTTTTAATTGACTTTAGTTAT
AAATAAATAAATTAGTAGAGCATAACTATCAAAATTCTGATTAATCAGCAGTATCACACATAAT
CGTTTAACAGATATAGCTATCTTAGCCCTCACCTCTGCAACAGGCTCCTAGCCCTTTTTCACAA
TGCTGCATTATACTAAAATGTATCAAATTCAGATATAGCTATCTTGTCCGCGCTCAGAAGATAA
GGCTAACAGTTCACGTGACTGTTCAAAATGGCTTCTCTTATATGAACATATACATGCTCCAAAT
TTCAAAGGTCAAATGCATGAAGAAAAGGAAGCTACAAGGGTAAATAGATGAAACAGGGTGCATT
GCAAATGAAGGAAAGGCAAGACATAGGCAACAGGACTATGTTATCCGCACCTTCTTTTTTAGGG
AAATTTTATCATCAAATAACTGTTTAGTAGGATCATCAGCTGGATTGTTTTGTCGACGCCTCTC
TGTTCTTGATCTTTCCAGATTAGATGGACCAGCAGTTTCATTGGTTATTTCAACATTATTAATC
CCACCTGGCATAGTGCTTGATCTGGGGAGGCCCCTGTCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.347894376
Functional Information
Coding potential Y
Potential coding position 1995163-1996778(-)
1996808-1995134(-)
Potential amino acid sequence MLSLLTLQHMMTGASPDQALCQVGLIMLK*(-)
MPGGINNVEITNETAGPSNLERSRTERRRQNNPADDPTKQLFDDKISLKKKLEMLNRIATVKDD
GTVVVDVPSSLETSTTDGVAYDGYSDVTVEEPLDGADISVRPPMDIVILIVGTRGDVQPFIAIG
KRLQDYGHRVRLATHANFKEFVLTAGLEFFPLGGDPKILAEYMVKNKGFLPSGPSEIPIQRKQM
KEIIFSLLPACKEPDPDTGIPFKVDAIIANPPAYDDRGLPRSSTMPGGINNVEITNETAGPSNL
ERSRTERRRQNNPADDPTKQLFDDKISLKKKLEMLNRIATVKDDGTVVVDVPSSLETSTTDGVA
YDGYSDVTVEEPLDGADISVRPPMDIVILIVGTRGDVQPFIAIGKRLQDYGHRVRLATHANFKE
FVLTAGLEFFPLGGDPKILAEYMVKNKGFLPSGPSEIPIQRKQMKEIIFSLLPACKEPDPDTGI
PFKVDAIIANPPAYDDRGLPRSSTMPGGINNVEITNETAGPSNLERSRTERRRQNNPADDPTKQ
LFDDKISLKKKLEMLNRIATVKDDGTVVVDVPSSLETSTTDGVAYDGYSDVTVEEPLDGADISV
RPPMDIVILIVGTRGDVQPFIAIGKRLQDYGHRVRLATHANFKEFVLTAGLEFFPLGGDPKILA
EYMVKNKGFLPSGPSEIPIQRKQMKEIIFSLLPACKEPDPDTGIPFKVDAIIANPPAYDDRGLP
RSSTMPGGINNVEITNETAGPSNLERSRTERRRQNNPADDPTKQLFDDKISLKKKLEMLNRIAT
VKDDGTVVVDVPSSLETSTTDGVAYDGYSDVTVEEPLDGADISVRPPMDIVILIVGTRGDVQPF
IAIGKRLQDYGHRVRLATHANFKEFVLTAGLEFFPLGGDPKILAEYMVKNKGFLPSGPSEIPIQ
RKQMKEIIFSLLPACKEPDPDTGIPFKVDAIIANPPAY(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017