Detail information of BGIOSGA003249_circ_g.1


General Information
CircRNA Name BGIOSGA003249_circ_g.1
ID in PlantcircBase osi_circ_008913
Alias Chr01:9860423_9862729(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10596322-10598628  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA003249
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA003249-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGAACACTATGTTGGTACAGAAGTTGATCCCAGAACAGAGAGTTTTCTGACTTGGGAAAGCT
TGGAGTCGGTGCGGAGAAACAAAGTTGGCTTGAAAGgcgtcctgccgcggatggcgggcagagc
cgccgcggcgccgttctcgacggcgtccggggagaccgtccgcgccacgctcttcccaggcgac
ggcatcgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCGTCCTGCCGCGGATGGCGGGCAGAGCCGCCGCGGCGCCGTTCTCGACGGCGTCCGGGGAGAC
CGTCCGCGCCACGCTCTTCCCAGGCGACGGCATCGGGCCGGAGATCGCCGAGTCGGTCAAGCAG
GTACGGAATTTCGGTTTTGTATATCCTGATTTGTTATTATATATACCCCTCTGTGACCACGACT
CCCATCAGCTCGGGCTGTATTCGTCCGATGCGGACCTTCCTTGATCCGATGAGAAAAAAAAAGC
AAGTTTGTTAGTTTGTTTTCAAGCTGCGTGCAACAGCTTTAAGATTTATTTTGGCCATGACGTG
CAGGGAAGATGATTAAATTCTTCGTCTCTTTTAGTTTTTTGTCTGCTGCCCACAGATTTATTTA
CATTCTGTCTAGAACGTGCAAAGATGGTTCTTATTACGCCATCTGATAATTGATGTGAACTTAT
GCCCCCGCCACTACTGCATGTAAATAATAATGACCTCTACCGCCTGTAAATGGCAATGAAAATA
ACGAGGACATTGCTTATTTCTGTTTTGTTTCTTTTCCATGAAAACTTAGATATGACAATGAGCA
TAAATAGTTTGCACATTCTACCTTAGTTTTTCTGTTCACTGGGAATGTTGCTTATTGAAGGATT
ACATTTACGTCGATAAAGAAGCAGAAGGCCCTTGTAAATTCTAGCCTCTTACCAAGAGACAGCA
TTTTGGACCCTTCAAATTAAATCACGTTCCTGAATTAGGGAGGATAAATCATGTTGCACAAAAT
TAAAATACCTTATACCTCTGTTTGGATCTCATGACTTTTTAGTCCATTGCGTGCATGCACTTTA
AGGTAATTTCAGTTTAAATTTGACATGGCATACTCTGCAGACAAGTCTATGTATGATATATGCT
ATTATTCTTGAAAGTAGAGCACTTGATTATTTATAATTCTAGTTGGAGAGCCAACTGAATTGAG
CTGATTTCTTCTAAAATTTGCTATTGGTGTCAGTTGGGCAACTAGGTTTTCTTGTTTTGATGTT
TCAATCCCCTTGAAATTTTATGCCGCCGGTAATGATATCTACGGTTTTGTTCACAATGTATCCT
CATCATTTATGTAGGTCACATGCAATGTAGTAGAGAGTTTATGGGTTACAATATGCACCTTGGT
CAAGTGTTTTATTTTTGATAAATTATATTTTATTATTCAATCATTGATTGAATGTGTGCCAGGC
TACTGTGTTTATAAGCTTTCTAAGATAAGTAGTAGATAGAGTGTGTGCATCAAAAACTTCACAG
TGGAAAATAAATTAATTTAAACCCCATAGTATTTCTGTGATAATCGAGAAAAAGTAGAATATCC
ACCGGCCGTTGATCTCTCTTTTGCTTTATTTGAATATGTGTGCCTAGTTAGTTTAGCTTGTAAA
TAAAAAGGAAGGGGCCTTTGGGTTTAACTTAGCACAGCTCCACTATTGAGTTTCATTTAGGCAT
ATCAGCCCATTCCTTTTGATTTCTTTCTCTTTTCATGTCTGAAATCATGTTTGGTTAATTGGCT
GCAAGCACATGCCTTTGATATCTCTGTTTGATTTACCTCCAATCAAACTGATTTAATAACTGCT
GTCAATTGTGTACCATCAGATTACTCTGTCATACTCTAATAATCAAACGACAATCAAATCTCCC
TAGGGAACCTGAATGTTGGAGCTAGTGTTGATGTGATGTTGCTGGCTTGCTTAAGATAGTGCTA
TATCCGTCCCAAAACGAATGCAAGTCTAGCAATGCACCTAGACAAGTGTTTGTCCATGTGCATA
GCTAGAATTGCATTCTTTTTGGAACAAGGTAGTACATTTTATGCTTATGCTGAGCTAATTATCT
TCCTAGTTTTTTTGGTGGACATAAATGCACATTAGAGTTCATGTTTAAACGGGGTGTTTAATTA
TTGCATAGAGCATGGGATCCAAAACTTACTGAGCAATGCTACTATGCTAGGCAACTCTTCTATA
TGTAAATATCCTCATTCTTGCAAAATAGGATACAACCTTACATAACTCTTCCGGCGATTGATGC
AATGAAGTCACACCTTCTTGTTCCAAAAATGGTGCCAAGTGCTTTCTGATCATGCTTTCTGACT
ATGTAGCTCGTTCTTATGTATTTATTATATCTTAGTTTGAACTTTTCCTTTTGCTGTTTCAGGT
ATTCAATGTTGCAGGGGTACCAATAGAATGGGAAGAACACTATGTTGGTACAGAAGTTGATCCC
AGAACAGAGAGTTTTCTGACTTGGGAAAGCTTGGAGTCGGTGCGGAGAAACAAAGTTGGCTTGA
AAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021