Detail information of AT2G31530_circ_g.6


General Information
CircRNA Name AT2G31530_circ_g.6
ID in PlantcircBase ath_circ_015908
Alias NA
Organism Arabidpsis thaliana
Position chr2: 13428822-13429477  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene AT2G31530
Parent gene annotation Preprotein translocase subunit SCY2, chloroplastic
Parent gene strand +
Alternative splicing AT2G31530_circ_g.1 AT2G31530_circ_g.2 AT2G31530_circ_g.3 AT2G31530_circ_g.4 AT2G31530_circ_g.5 AT2G31530_circ_g.7 AT2G31530_circ_g.8
Support reads 3
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G31530.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGAGGTGGAGCCGTACATACCTTTTAACATCAACCCGGCTGGAATGCAACCTGTTCTCACAAC
CACATATCTTTTGGCATTCCCCAGCATTCTTGCAAGgtcatggctcatctctgattatttgtgt
gggaatattgacgggctacacagagactttacacaagatgctcaatcaaatctcaggtaccttt
ggtttttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 343
Transcript exons: 13428822-13428905,13429058-13429199,13429361-13429477
GTCATGGCTCATCTCTGATTATTTGTGTGGGAATATTGACGGGCTACACAGAGACTTTACACAA
GATGCTCAATCAAATCTCAGGAAGTTTCTCGAACTGGTTGCCTTACTTGTTAGGCTTGCTGGGC
ATTTTTACCGTAGTAACTATGTTCGCTGTTGTTGTTACTGAGGGCTGCAGGAAGATTAAACTAC
AATATTATGGTTTTAAACTTGCTTCTGCTTCGAGAGAAGGTTCTCCAATAACAGAGGTGGAGCC
GTACATACCTTTTAACATCAACCCGGCTGGAATGCAACCTGTTCTCACAACCACATATCTTTTG
GCATTCCCCAGCATTCTTGCAAG

Genomic sequence GTCATGGCTCATCTCTGATTATTTGTGTGGGAATATTGACGGGCTACACAGAGACTTTACACAA
GATGCTCAATCAAATCTCAGGTACCTTTGGTTTTTCTTACTCCACATTTCTCAAACTTATGGTT
AGTCTTTACATTAGACCTGCATGTCTTCCACATTTCCTGGAGGCAACTATCATTCGCCTATCTT
CTCAATTGATTTATAAAAAAAGGAAGCGTTCTTCTCTTTTGCAGGAAGTTTCTCGAACTGGTTG
CCTTACTTGTTAGGCTTGCTGGGCATTTTTACCGTAGTAACTATGTTCGCTGTTGTTGTTACTG
AGGGCTGCAGGAAGATTAAACTACAATATTATGGTTTTAAACTTGCTTCTGCTTCGAGGTGATA
TATGTAGCTCAGCATCATTATTTTATCGAAAAGATTGTTGTATAATTGCCACTTTTACCAATAT
AGCTAGGAGTAGATTACGGTTAAAGTACATTTGGATGCAACGTGTGGTTTACTCATATTTGTGT
TTATGCTATGTTTTGCCATTTGGGCAGAGAAGGTTCTCCAATAACAGAGGTGGAGCCGTACATA
CCTTTTAACATCAACCCGGCTGGAATGCAACCTGTTCTCACAACCACATATCTTTTGGCATTCC
CCAGCATTCTTGCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.246490002
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017