Detail information of BGIOSGA034817_circ_ag.3


General Information
CircRNA Name BGIOSGA034817_circ_ag.3
ID in PlantcircBase osi_circ_009240
Alias Chr11:2638623_2642990(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 2295920-2300287  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA034817_circ_ag.1 BGIOSGA034817_circ_ag.2 BGIOSGA034817_circ_ag.4 BGIOSGA034818_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCAAAATTTAACTTCAATGACTTCTTGAAGCAAACACAAGCTATCGCACAAATGGGTTCATTT
AGTCGTATAATTGGCATGATTCCAGGCATGAACAAGggttactcctgcacaaattcgagaagcc
gagaaaagacttgcatttgtggagtctatgatcaatgcaatgactgccggtatgttactcgtga
ttctagga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTACTCCTGCACAAATTCGAGAAGCCGAGAAAAGACTTGCATTTGTGGAGTCTATGATCAAT
GCAATGACTGCCGGTATGTTACTCGTGATTCTAGGACTGTTGCTAATTGTTATACAACCAAATG
AAGCTTACTACGTTGTTTCCATGGGTAATAGACCTAGACACCTAATTGCATGTATTCTGGCATG
AGCAGAGGAAAGGGAAAAGCCAGAATTACTGGCTGAATCACGTGACAGGAGGATAAGAGTGGCT
GAAGAGTCCGGAAAGAGTGAACACGAGGTTCAGTTGTAATTTCTGTCTTCTCTTTGTTAAAAAA
CAATCACAATATTTTTTGCTCATTCCAGTTACCATGGAGCTGACGCGTGCACACGCACACACAC
ATTGCCGTTTTTCACTATCAGGTGAGCCAGTTGGTTGCCCAGCTTTTCCAAATGCGTGCTCAGA
TGCAGAAGCTGATGGGTGTGATGACCGGACAAGAAGCACTTCCAGGCATGGGGAATCTCATGGA
ATCTCTTAACGCCGATGAGAAGGTGATAATCTAACAATGCCTCGGGTGGTGTGGGTGATTTGGT
TCACTACAGTTTGGCTGGGTTACTTACGGTTGCCTGTATTTGTTGTGCATCATGATCATTCAGG
CACCTCCTGGCACTGCACGACGGAAGAGGAGGCACAGCAAGACGAGGCAGAGGGAGCTGGATGC
AGTCCCTAGTTCTTGAGCTGGTGAGCGTTGTAGTTCAGAGTTACTGCTCTTTTGCTTCAGAGAC
CCGGATCTGAGAAAAAAGAGATGAAAAAAAAATGTTGTCTTGCTACCTTTTTTAGTTTGTACGT
AGGAGATCTGCAGGAAGTTCATAGGAAGCAGTAATTTCCTACCAAATTGTAATGTTACTTAGCC
AGTCCTACTCAGCAATGCAATCGGTTCACTCGAATGCTCGGACTTTTTACATTACATTAATCAT
GAATGTATATGTTGTAGAAGGATCAGGTTCATTTCAAAACTTCACCATCCATGTCCATTCGAAC
TCAAGAATTTTCTGATTCATGCGGAAAATCGAAAATGTACTGACTGTGTTGGGATTACCATACC
CAGAAAAACAAAAGCAAAGTCCTAAATTTTTTTAAAAAAAAGTTGAAGGGGAAAACATTGAAGT
GTAAATAGGCCCATATGTGGGCCCAACATCGGCAAGCCCGAAAGCCCAATAGGGCCCATATTCA
ACAATCGCCTCTCTCTTATCCTCCCCGTTGGTTCCCTCCCCTCCGCAGAACGCCACCAAAAATG
GAGGCCACCAGTAGTACTACACTAGCGCTCTCCTCGCCGCCCACCGCCGCCGCCCGCCGCTCGC
CGGCGAAGGCGATCGTCACCTCCCACCACCTGCGCCACTCCTCCGTCCCCGCCCTTCACCTCCG
CGCGGTCCCCGGCCCCTCCTTCCGCGCCCTCCCCTCACCTGGCTTCCCGGTCCCTCCCAACTGC
TAGTTTCTTGGCTTCTTCAATTCTTCCGCCCCGGATAAATTTCGCTTTTGCTGATTTGTCTTGG
ATGCGTTCAGGGATGGAGGAGGAAGAGGGGAAGCGGGCTGGTTGTGCGGGCAGAGATGTTTGGG
CAGCTCACGACCGGGCTGGAGTCCGCGTGGAACAAGCTGCGGGGAACAGGTGAGTTTCTTTTTG
TTTTTGACGCAATTTTTCTTCATGTAAGTTGTAAATTTGTTGTCAATGAGATGAATGAATCAAG
GAGATGTCTTTATTGGTTCAAGATCAACTGACGAAGGACAACATCGCTGAACCAATGCGGGATA
TCAGAAGAGCACTTTTGGAGGCAGATGTATGTGGTGTCATTCTTTACATGGTTTTGTTACATTT
TCTCGATCTAATTCACTACCTACTTTGCAGGTGAGTTTGCCGGTAGTGAGAAGTTTTATTGAGT
CCGTTACTGAAAAAGCTGTAGGCACTGATGTGATTCGAGGTGTCAAGCCTGAGCAACAGCTGGT
GAAGGTATACTAAACAATGACATTATGGCTCTGGATAGTTTTAGGCTTAATTTTCTTCATTTAA
GTCTGTGTTAATCTACTAGATATTAGTGCATGTTGTGGTATAAGTTCAGCATGCATTGTTTTCA
CTTCAGAGAAACAAGAGTCAGATATATTACTGTGTAATTCTAGCACCGGTTGGACTAACGTAAA
AAAAACGATGCAGGTTGTGAATGATGAACTTGTACAGTTGATGGGTGGGGAGGTATCAGATTTG
GTGTTTGCAAAAACTGCCCCAACAGTTATCCTATTGGCGGGTCTACAAGGTGTTGGGAAAACTA
CTGTTTGTGCAAAGCTTGCCTATTATCTAAAGAAAATGGTGCCTTCCTTAGTCCTCTACTTTAA
GCATACTCTAAGATTCCTAGACTATTGAATGCTTATAGACCAGTCTCAGGTTACAGGGGAAGAG
TTGCATGCTGATTGCTGCGGATGTCTACAGGCCTGCTGCCATTGATCAACTCACTATTCTGGGG
AAACAGGTATTCTGAAGACAACACTCTTTCCAGGGTAGTATTGTCTTGGAAACCTTTTCTAGCT
ACTAATTTTAACTCTCTAACACAAAAATTCAAATTTGCCGCACTCTGCATATTTTACCTGTTTG
AAGTTAAAATGACAGCTTCTTTTAAGTGTATTGCTGTGATGCGCTTTTTAATGAAATACATTTC
AACTTTCATAGGTTGGGGTTCCAGTTTACTCTGAAGGAACTGAAGCTAAACCTTCACAAATTGC
CAAGAATGGCATAAAGGAGGCAAAAAGCAAGAAAACTGACGTAATCATAGTGGATACTGCTGGA
AGGCTGCAGGTCATTCTTATTTTTTCTTTAATTTTTTCCTCTTGTTTCAGCTATGATTCTAAAA
GAACATGGATCTGTTTTTGCTAGTTTTTACCAGTTGACATCTCACATAAAAATATCTATAATGT
CAGATCTTGATCATCTTGAACTTTAAAATATTAGTTATGCCTTATGTTCATGTATGTGATTAAA
TTGCAATAGTTTACACTTTACACTTCTATGTAGTTACAAATTTTTGTTTTATCTTTGTTTCAAA
CTTAACATAGTACTTCCACTTGTAAAAGATCATCTGATTAGTCCTTCTATGGTTAGGTAGATAA
AGCCATGATGAGTGAGTTGAAAGAGGTAAAAAGGGCAGTAAATCCTACAGAAGTTCTACTTGTG
GTGGATGCCATGACTGGACAAGAAGCTGCATGTACGTAGCTACCACTCATTGTTCTTCCAGGGG
TATAGGGATCTAGTAAATACTGTTCCCAAATTATTTTTGCCTCACGTACAAGTTTTTGTTCCAA
GTATCAATATCATGTTCATTTTATTGCTTGCTCCTCATGATAATCAAATATTGAACTCGTTATC
ATCTGCTATAGTTGCCCTACGACTTACCCGCATTTCTTTTCTGATATGGCCAGCATTGGTTAGC
ACCTTCAATGTTGAGATTGGTATTACTGGTGCTATACTGACAAAACTGGATGGTGATTCCAGAG
GTGGAGCAGCACTAAGTATCAAAGAGGTCTGTTGAATGTGAAAAACAAATGTCCATCATTTTGT
TTTTCCATCTAATTATTAGTTCAGAGTTCTTTATTTTCTCGAACAAGTTCAGAGTTCTTTGTGA
AATAATAAAAACCAATTCTGTCCTGAACAATGTATTAATTCTGCTAAGAAGGCGCAACAATTAC
TGTTTCCGGTTCATTTTGTTGGATTCCACTTCCTAGATTCCTCGCTTACTGAAAAAAAAGTTTG
GTTGTGTGAGTTCAACTGGTCCTGACAAATTTGTTGTCTAATAAAAAATGTCCATAATAGGGTT
ATATGTTATTTGACTTTGTATCTGTGACTCTTCCAATTGTATCTTTACATGTTATTCTGGTACT
TTTGTCACACCTACATTTCTCAGCAATTTTACTTTGTGTTCCCTTGGCTGGTAGCATATAATAA
ATATGAAGAAATGATGAATCTGTAGGTATCTGGAAAGCCCATCAAGTTTGTAGGGCGAGGAGAA
CGCATGGAAGATCTTGAGCCTTTCTATCCTGATCGTATGGCACAACGAATCTTGGGAATGGGAG
ATGTACTTTCATTTGTTGAAAAGGCACAGGAAGTGGTAGGCAGGCTTCTGTGAAATATTCCTTT
CTTTTTTTACTTTAATTAAAGAACAATTTGATACTCATAGTGTGTAATCTACTGGTACAAGTAG
ATGCGTCAAGAAGATGCTGAGGAATTACAGAAGAAGATCCTGAGTGCAAAATTTAACTTCAATG
ACTTCTTGAAGCAAACACAAGCTATCGCACAAATGGGTTCATTTAGTCGTATAATTGGCATGAT
TCCAGGCATGAACAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021