Detail information of Os03g0267700_circ_g.3


General Information
CircRNA Name Os03g0267700_circ_g.3
ID in PlantcircBase osa_circ_019053
Alias NA
Organism Oryza sativa
Position chr3: 8867214-8867493  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0267700
Parent gene annotation Adenine nucleotide translocator 1 domain containing protein. (Os
03t0267700-01)
Parent gene strand +
Alternative splicing Os03g0267700_circ_g.1 Os03g0267700_circ_g.2 Os03g0267700_circ_g.4
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGGTAGAAGGCATATTGCATTTATGCTCTCTGCTTTGGGCATTATTGAACTGTAGGCCTTTTT
CCATTGAAGCTTTGCATTTTTAATATGTAATCTTCAgtaagcctattgtcaccagtctgcatat
cactggcttcctgtgttgattctcatccacttgaaaagccactatttgaaaaagtttccctgca
attagacc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 280
Transcript exons: 8867214-8867493
GTAAGCCTATTGTCACCAGTCTGCATATCACTGGCTTCCTGTGTTGATTCTCATCCACTTGAAA
AGCCACTATTTGAAAAAGTTTCCCTGCAATTAGACCAAACAACATCTATTTCCATGTGAAGGAC
ATAGATAACTCAAAATCCCCTGTTGATTCCCTTCTTTATCAGTTTCACGTTCAGGGTAGAAGGC
ATATTGCATTTATGCTCTCTGCTTTGGGCATTATTGAACTGTAGGCCTTTTTCCATTGAAGCTT
TGCATTTTTAATATGTAATCTTCA

Genomic sequence GTAAGCCTATTGTCACCAGTCTGCATATCACTGGCTTCCTGTGTTGATTCTCATCCACTTGAAA
AGCCACTATTTGAAAAAGTTTCCCTGCAATTAGACCAAACAACATCTATTTCCATGTGAAGGAC
ATAGATAACTCAAAATCCCCTGTTGATTCCCTTCTTTATCAGTTTCACGTTCAGGGTAGAAGGC
ATATTGCATTTATGCTCTCTGCTTTGGGCATTATTGAACTGTAGGCCTTTTTCCATTGAAGCTT
TGCATTTTTAATATGTAATCTTCA
Conservation Information
Conserved circRNAs NA
PMCS 0.235595238
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017