Detail information of AT2G04350_circ_g.2


General Information
CircRNA Name AT2G04350_circ_g.2
ID in PlantcircBase ath_circ_012775
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1516678-1517612  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT2G04350
Parent gene annotation Long chain acyl-CoA synthetase 8
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04350.1:4
AT2G04350.2:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGAAAGGAACCAAAGGAGATGTTTCAGCTCTGAAGCCAACTATAATGACTGCAGTTCCAGCT
ATTCTGGATCGTGTCCGAGAAGGAGTTCTTAAAAAGggatgtttcaggcagagcataaccgttg
ttactatttatgcttctttaggagaagaggctttgatttactcactcaatgaggttggtagggg
aagttttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATGTTTCAGGCAGAGCATAACCGTTGTTACTATTTATGCTTCTTTAGGAGAAGAGGCTTTGA
TTTACTCACTCAATGAGGTTGGTAGGGGAAGTTTTGAATGTGTATGTTTTTTATTAGTAAATTT
GGTTGTTGGATCTCTGAATCTTGCTTGTGTATTGTTGACAGACTCGAGTGTCAACCTTAATATG
TGACTCAAAACAACTTAAGAAGTTGTCTGCGATACAATCAAGCTTGAAAACTGTGAAGAACATT
ATTTACATTGAAGAAGATGGAGTAGATGTTGCTTCTAGTGATGTCAATAGTATGGGTGATATAA
CTGTTTCGTCGATCTCTGAAGTTGAGAAACTTGGGCAGAAGAACGCTGTTCAACCGATCTTACC
TTCGAAGAATGGAGTTGCTGTTATAATGTTTACCAGTGGTAGTACTGGTCTACCAAAGGTATGT
GTTGCACTGTGTCTTCTCTTTTCTTTATGTGTTTTGTTCACCTGAATTCTTGATTGGTGTACCT
TACATTGTGTGCATTCACTCAGGGAGTTATGATTACCCACGGAAATCTTGTCGCAACTGCTGCA
GGAGTTATGAAGGTGGTTCCAAAGTTGGATAAAAATGATACATATATTGCGTACTTACCTTTGG
CTCATGTGTTTGAGCTGGAAGCTGAGGTATGTTGCTGTACTCTCTCTCCCTCTCTATGTCTCTC
TCATTTTAACTGCTAACTTATTTTCTTACTGTTTCTTGCCAAATCATGGTTTTTCAGATTGTGG
TCTTTACCTCAGGTAGTGCCATCGGTTACGGCTCAGCAATGACTTTAACTGACACTTCAAATAA
AGTTAAGAAAGGAACCAAAGGAGATGTTTCAGCTCTGAAGCCAACTATAATGACTGCAGTTCCA
GCTATTCTGGATCGTGTCCGAGAAGGAGTTCTTAAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.186706595
Functional Information
Coding potential Y
Potential coding position 1516985-1517609(+)
Potential amino acid sequence MGDITVSSISEVEKLGQKNAVQPILPSKNGVAVIMFTSGSTGLPKGVMITHGNLVATAAGVMKV
VPKLDKNDTYIAYLPLAHVFELEAEIVVFTSGSAIGYGSAMTLTDTSNKVKKGTKGDVSALKPT
IMTAVPAILDRVREGVLKKGCFRQSITVVTIYASLGEEALIYSLNETRVSTLICDSKQLKKLSA
IQSSLKTVKNIIYIEEDGVDVASSDVNSMGDITVSSISEVEKLGQKNAVQPILPSKNGVAVIMF
TSGSTGLPKGVMITHGNLVATAAGVMKVVPKLDKNDTYIAYLPLAHVFELEAEIVVFTSGSAIG
YGSAMTLTDTSNKVKKGTKGDVSALKPTIMTAVPAILDRVREGVLKKGCFRQSITVVTIYASLG
EEALIYSLNETRVSTLICDSKQLKKLSAIQSSLKTVKNIIYIEEDGVDVASSDVNSMGDITVSS
ISEVEKLGQKNAVQPILPSKNGVAVIMFTSGSTGLPKGVMITHGNLVATAAGVMKVVPKLDKND
TYIAYLPLAHVFELEAEIVVFTSGSAIGYGSAMTLTDTSNKVKKGTKGDVSALKPTIMTAVPAI
LDRVREGVLKKGCFRQSITVVTIYASLGEEALIYSLNETRVSTLICDSKQLKKLSAIQSSLKTV
KNIIYIEEDGVDVASSDVNSMGDITVSSISEVEKLGQKNAVQPILPSKNGVAVIMFTSGSTGLP
KGVMITHGNLVATAAGVMKVVPKLDKNDTYIAYLPLAHVFELEAEIVVFTSGSAIGYGSAMTLT
DTSNKVKKGTKGDVSALKPTIMTAVPAILDRVREGVLKK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017