Detail information of Os11g0180200_circ_ig.1


General Information
CircRNA Name Os11g0180200_circ_ig.1
ID in PlantcircBase osa_circ_008694
Alias Os_ciR7222
Organism Oryza sativa
Position chr11: 4008781-4009335  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0180200_circ_igg.1
Support reads 2/1
Tissues root/root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGCTCACATGGCATGACATCACTGTAGCGGTTTTTTTCCCTATTAGCAGGATTTTGAGCAGC
AGTAAATTTTCCCGTCTGGAATGCTGTCTGTATGTCcttggcaccatcaaatttagtgaccata
acaatcacaggacactggttttcgtagaccatctgccagaaatccccaaatgtcttgaccaagg
gaccttga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGGCACCATCAAATTTAGTGACCATAACAATCACAGGACACTGGTTTTCGTAGACCATCTGC
CAGAAATCCCCAAATGTCTTGACCAAGGGACCTTGAGTGGAAATGAACTTTGTATGACTTTGAC
CTTGGTCATCAGTCTGTAAATATTATACCACATAAATAACCTATAAGGCTATAACAAATCCAGA
GGTCCCATGTCCCATCTAGGATTTGAAACATTCAGTATTGAAAAAGATGGAAACTCGTGTATAA
CATAAACACCAGGAAATATGCCCCTGTGTTTTTACCTCTATAAGGCTTGCATTGATGTATTCAT
TGCTTGAAGGGTGATCACTTGCTGAGGGCTTTAAACGTACCCGGGTTTCATCAACTAAAGAAGA
GAAGTTAAGTCAAACTAATAATACGTCATGGAGGTCTCTTGGCTAACATACAGCAGCCAACACA
AGTTGATAATGCTCACATGGCATGACATCACTGTAGCGGTTTTTTTCCCTATTAGCAGGATTTT
GAGCAGCAGTAAATTTTCCCGTCTGGAATGCTGTCTGTATGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.328726837
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017