Detail information of Os02g0828200_circ_g.1


General Information
CircRNA Name Os02g0828200_circ_g.1
ID in PlantcircBase osa_circ_017339
Alias Os02circ30975
Organism Oryza sativa
Position chr2: 35588337-35589047  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl, circRNA_finder, find_circ
Parent gene Os02g0828200
Parent gene annotation TPR-like domain containing protein. (Os02t0828200-01)
Parent gene strand +
Alternative splicing NA
Support reads 14/2
Tissues leaf and panicle/pistil
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os02t0828200-01:1
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F: AGGTGCTTCTGAACATGGAGAT
R: TTGCTATGCTTTCGTTGAGCTA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGAGGCTTGGGTGTCATGGGGCAGGGCGATGCTGATCAAGGCCAAGGACAAGGATTGGCCGCA
CACCTCCTTCGGCATCCTCAGCATAGGGCTTGTCAAgactggcgaggatgtggcactgtcgagg
cgcatcgcggcaaccttccttctcatgacaatggcggacttcagcgaccagctcttcgactggc
aggatcgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 187
Transcript exons: 35588337-35588398,35588923-35589047
GACTGGCGAGGATGTGGCACTGTCGAGGCGCATCGCGGCAACCTTCCTTCTCATGACAATGGAG
CAGCTGGGACAAGAGGATGCCATGGGAGGCTTGGGTGTCATGGGGCAGGGCGATGCTGATCAAG
GCCAAGGACAAGGATTGGCCGCACACCTCCTTCGGCATCCTCAGCATAGGGCTTGTCAA

Transcript length: 197
Transcript exons: 35588337-35588459,35588974-35589047
GACTGGCGAGGATGTGGCACTGTCGAGGCGCATCGCGGCAACCTTCCTTCTCATGACAATGGCG
GACTTCAGCGACCAGCTCTTCGACTGGCAGGATCGCCTCTTCGACAACACCAATGGCCGGCGAT
GCTGATCAAGGCCAAGGACAAGGATTGGCCGCACACCTCCTTCGGCATCCTCAGCATAGGGCTT
GTCAA

Transcript length: 213
Transcript exons: 35588337-35588429,35588928-35589047
GACTGGCGAGGATGTGGCACTGTCGAGGCGCATCGCGGCAACCTTCCTTCTCATGACAATGGCG
GACTTCAGCGACCAGCTCTTCGACTGGCACTGGGACAAGAGGATGCCATGGGAGGCTTGGGTGT
CATGGGGCAGGGCGATGCTGATCAAGGCCAAGGACAAGGATTGGCCGCACACCTCCTTCGGCAT
CCTCAGCATAGGGCTTGTCAA

Transcript length: 252
Transcript exons: 35588337-35588437,35588897-35589047
GACTGGCGAGGATGTGGCACTGTCGAGGCGCATCGCGGCAACCTTCCTTCTCATGACAATGGCG
GACTTCAGCGACCAGCTCTTCGACTGGCAGGATCGCCGGGTGAAGCTGTTGCTGGAGTGGGGGA
GCAGCTGGGACAAGAGGATGCCATGGGAGGCTTGGGTGTCATGGGGCAGGGCGATGCTGATCAA
GGCCAAGGACAAGGATTGGCCGCACACCTCCTTCGGCATCCTCAGCATAGGGCTTGTCAA

Transcript length: 261
Transcript exons: 35588337-35588443,35588894-35589047
GACTGGCGAGGATGTGGCACTGTCGAGGCGCATCGCGGCAACCTTCCTTCTCATGACAATGGCG
GACTTCAGCGACCAGCTCTTCGACTGGCAGGATCGCCTCTTCGCAGGGGTGAAGCTGTTGCTGG
AGTGGGGGAGCAGCTGGGACAAGAGGATGCCATGGGAGGCTTGGGTGTCATGGGGCAGGGCGAT
GCTGATCAAGGCCAAGGACAAGGATTGGCCGCACACCTCCTTCGGCATCCTCAGCATAGGGCTT
GTCAA

Transcript length: 268
Transcript exons: 35588337-35588484,35588928-35589047
GACTGGCGAGGATGTGGCACTGTCGAGGCGCATCGCGGCAACCTTCCTTCTCATGACAATGGCG
GACTTCAGCGACCAGCTCTTCGACTGGCAGGATCGCCTCTTCGACAACACCAATGGCCGCCTCG
AGTTCAGTGGCAATACCTGGCTGGGACAAGAGGATGCCATGGGAGGCTTGGGTGTCATGGGGCA
GGGCGATGCTGATCAAGGCCAAGGACAAGGATTGGCCGCACACCTCCTTCGGCATCCTCAGCAT
AGGGCTTGTCAA

Transcript length: 278
Transcript exons: 35588337-35588541,35588975-35589047
GACTGGCGAGGATGTGGCACTGTCGAGGCGCATCGCGGCAACCTTCCTTCTCATGACAATGGCG
GACTTCAGCGACCAGCTCTTCGACTGGCAGGATCGCCTCTTCGACAACACCAATGGCCGCCTCG
AGTTCAGTGGCAATACCTGGACTTCGCTCTGGCCAGGCACCGGCAAGCCCGGCCTCTGGACTGC
CTCCATATCCCGCCGATGCTGATCAAGGCCAAGGACAAGGATTGGCCGCACACCTCCTTCGGCA
TCCTCAGCATAGGGCTTGTCAA

Transcript length: 283
Transcript exons: 35588337-35588398,35588432-35588532,35588928-35589047
GACTGGCGAGGATGTGGCACTGTCGAGGCGCATCGCGGCAACCTTCCTTCTCATGACAATGGAT
CGCCTCTTCGACAACACCAATGGCCGCCTCGAGTTCAGTGGCAATACCTGGACTTCGCTCTGGC
CAGGCACCGGCAAGCCCGGCCTCTGGACTGCCTCCCTGGGACAAGAGGATGCCATGGGAGGCTT
GGGTGTCATGGGGCAGGGCGATGCTGATCAAGGCCAAGGACAAGGATTGGCCGCACACCTCCTT
CGGCATCCTCAGCATAGGGCTTGTCAA

Transcript length: 301
Transcript exons: 35588337-35588454,35588865-35589047
GACTGGCGAGGATGTGGCACTGTCGAGGCGCATCGCGGCAACCTTCCTTCTCATGACAATGGCG
GACTTCAGCGACCAGCTCTTCGACTGGCAGGATCGCCTCTTCGACAACACCAATGTATGAGGAG
GCAGAGGAGCAGATAGAGGCAGGGGTGAAGCTGTTGCTGGAGTGGGGGAGCAGCTGGGACAAGA
GGATGCCATGGGAGGCTTGGGTGTCATGGGGCAGGGCGATGCTGATCAAGGCCAAGGACAAGGA
TTGGCCGCACACCTCCTTCGGCATCCTCAGCATAGGGCTTGTCAA

Transcript length: 306
Transcript exons: 35588337-35588491,35588897-35589047
GACTGGCGAGGATGTGGCACTGTCGAGGCGCATCGCGGCAACCTTCCTTCTCATGACAATGGCG
GACTTCAGCGACCAGCTCTTCGACTGGCAGGATCGCCTCTTCGACAACACCAATGGCCGCCTCG
AGTTCAGTGGCAATACCTGGACTTCGCGGGTGAAGCTGTTGCTGGAGTGGGGGAGCAGCTGGGA
CAAGAGGATGCCATGGGAGGCTTGGGTGTCATGGGGCAGGGCGATGCTGATCAAGGCCAAGGAC
AAGGATTGGCCGCACACCTCCTTCGGCATCCTCAGCATAGGGCTTGTCAA

Transcript length: 314
Transcript exons: 35588337-35588485,35588883-35589047
GACTGGCGAGGATGTGGCACTGTCGAGGCGCATCGCGGCAACCTTCCTTCTCATGACAATGGCG
GACTTCAGCGACCAGCTCTTCGACTGGCAGGATCGCCTCTTCGACAACACCAATGGCCGCCTCG
AGTTCAGTGGCAATACCTGGAGCAGATAGAGGCAGGGGTGAAGCTGTTGCTGGAGTGGGGGAGC
AGCTGGGACAAGAGGATGCCATGGGAGGCTTGGGTGTCATGGGGCAGGGCGATGCTGATCAAGG
CCAAGGACAAGGATTGGCCGCACACCTCCTTCGGCATCCTCAGCATAGGGCTTGTCAA

Transcript length: 318
Transcript exons: 35588337-35588524,35588918-35589047
GACTGGCGAGGATGTGGCACTGTCGAGGCGCATCGCGGCAACCTTCCTTCTCATGACAATGGCG
GACTTCAGCGACCAGCTCTTCGACTGGCAGGATCGCCTCTTCGACAACACCAATGGCCGCCTCG
AGTTCAGTGGCAATACCTGGACTTCGCTCTGGCCAGGCACCGGCAAGCCCGGCCTCTGGAGGGG
GAGCAGCTGGGACAAGAGGATGCCATGGGAGGCTTGGGTGTCATGGGGCAGGGCGATGCTGATC
AAGGCCAAGGACAAGGATTGGCCGCACACCTCCTTCGGCATCCTCAGCATAGGGCTTGTCAA

Transcript length: 366
Transcript exons: 35588337-35588437,35588439-35588539,35588884-35589047
GACTGGCGAGGATGTGGCACTGTCGAGGCGCATCGCGGCAACCTTCCTTCTCATGACAATGGCG
GACTTCAGCGACCAGCTCTTCGACTGGCAGGATCGCCCTTCGACAACACCAATGGCCGCCTCGA
GTTCAGTGGCAATACCTGGACTTCGCTCTGGCCAGGCACCGGCAAGCCCGGCCTCTGGACTGCC
TCCATATCCCCAGATAGAGGCAGGGGTGAAGCTGTTGCTGGAGTGGGGGAGCAGCTGGGACAAG
AGGATGCCATGGGAGGCTTGGGTGTCATGGGGCAGGGCGATGCTGATCAAGGCCAAGGACAAGG
ATTGGCCGCACACCTCCTTCGGCATCCTCAGCATAGGGCTTGTCAA

Genomic sequence GACTGGCGAGGATGTGGCACTGTCGAGGCGCATCGCGGCAACCTTCCTTCTCATGACAATGGCG
GACTTCAGCGACCAGCTCTTCGACTGGCAGGATCGCCTCTTCGACAACACCAATGGCCGCCTCG
AGTTCAGTGGCAATACCTGGACTTCGCTCTGGCCAGGCACCGGCAAGCCCGGCCTCTGGACTGC
CTCCATATCCCGCATGGGCGCGCTCTACAGCCTCATCGTTCGCGAGGAAGAGATACACATAGCT
CAACGAAAGCATAGCAACAATGGCCAAGAAGACGATCGTGACGAGGACATTGAGCTGGTGATCC
CACCGGTGTTCAATGGCTGCACCCAGGTGCTCACCGCCGACGACCAGAAGGCGGCACGGGACCT
CTACTGGGATGCAGTTTGCAGCGGCGGCGAGGACGAGACGGATTGGCGCAAGGTGGAGGAGATC
CTGCGACGGTGCATTGGCAGGAACCCGTTTGTAGGAGAGCCTCACCTGGTTCTTGCTCAGGTGC
TTCTGAACATGGAGATGTATGAGGAGGCAGAGGAGCAGATAGAGGCAGGGGTGAAGCTGTTGCT
GGAGTGGGGGAGCAGCTGGGACAAGAGGATGCCATGGGAGGCTTGGGTGTCATGGGGCAGGGCG
ATGCTGATCAAGGCCAAGGACAAGGATTGGCCGCACACCTCCTTCGGCATCCTCAGCATAGGGC
TTGTCAA
Conservation Information
Conserved circRNAs osi_circ_004450* osi_circ_012512
PMCS 0.576853387
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017