Plant Circular RNA Database

Detail information of 2_circ_igg.16

			
						 General Information
					
						CircRNA Name
						2_circ_igg.16
					
						ID in PlantcircBase
						ath_circ_013172
					
						Alias
						Chr2:4485019|4486252
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 4485019-4486252  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							igg-circRNA							
									
						Identification method
						CIRCexplorer; CIRI
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							2_circ_igg.7 2_circ_igg.8 2_circ_igg.9 2_circ_igg.10 2_circ_igg.11 2_circ_igg.12 2_circ_igg.13 2_circ_igg.14 2_circ_igg.15 2_circ_igg.17 2_circ_igg.18 2_circ_igg.19 2_circ_igg.20 2_circ_igg.21 2_circ_igg.22 2_circ_igg.23 2_circ_igg.24 2_circ_igg.25 2_circ_igg.26 2_circ_ig.27 2_circ_ig.28 2_circ_ig.29 						
					
						Support reads
						26
					
						Tissues
						seedling
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-CA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	2_circ_igg.16
ID in PlantcircBase	ath_circ_013172
Alias	Chr2:4485019\|4486252
Organism	Arabidpsis thaliana
Position	chr2: 4485019-4486252 JBrowse»
Reference genome	TAIR10.38
Type	igg-circRNA
Identification method	CIRCexplorer; CIRI
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	2_circ_igg.7 2_circ_igg.8 2_circ_igg.9 2_circ_igg.10 2_circ_igg.11 2_circ_igg.12 2_circ_igg.13 2_circ_igg.14 2_circ_igg.15 2_circ_igg.17 2_circ_igg.18 2_circ_igg.19 2_circ_igg.20 2_circ_igg.21 2_circ_igg.22 2_circ_igg.23 2_circ_igg.24 2_circ_igg.25 2_circ_igg.26 2_circ_ig.27 2_circ_ig.28 2_circ_ig.29
Support reads	26
Tissues	seedling
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-CA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GTTTGCAGGACCGGCAAAATTTGAAAGTTTTGAAAGAGAGGTTTGGGCCGAAAGAGAGAGAATA
AATCGATTTGGCCCAAAGATCCGGACAAAAAAGCAGgatttcatgtagtgatcaagctcttctc
tctctattctagagaaacttcatacacaaacacaactttcaactttcaggaccgttcgaagaaa
ctgaaatt

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							GATTTCATGTAGTGATCAAGCTCTTCTCTCTCTATTCTAGAGAAACTTCATACACAAACACAAC
TTTCAACTTTCAGGACCGTTCGAAGAAACTGAAATTAAAACATGGAAAGGTTCCAGTGGGGAAC
ATCACCGTTGATATGGTATGGATTCTAATGTTTTTTGTGATTACACAAAGGCTTTATCTTTTAA
ACATACTCGTATATATAGTTTTACATGTGGTATTTGTGAAGGTACTTGGTGGAATGAGAGGGAT
GACCGGATTACACAATCGTAACCTCATTGCTTGATGCAGATGAGGTATGGTTATAAATTTGAAT
CATATAGATAATCACAAGCTTTTGTTTCAAACTGGGAGTAGATAATTAAATCATATTATTTTTT
CAAAATTTCTGTTATATAGATTGAAGGCTGAAGAACTGATGGCTTAAAGGACGAGTGAAGGCTG
TTACCTCCGGAGACTGCTTAGTGATCACGGCTTTGAGCCACAACAGAGCTGGACCTCCACCGGA
AAAGACCATTACTTTTTCTTCTCTTATGGCACCTAAGACGGTGAGTTTTAATCTGTTCTTTTAC
CAGATATTAGTGTTTGAAACAAAAGCTTGTGATCATCCCAACCAAATGCTGAAGCTGAAAACTG
AAATGAAAACATGTACATGTGAATCGACTGTTTGCTTGAGAGATAATGGTATGTGTGTGGTGAT
GGTAAAAGATTTCGATTGTTTATATAGCACAAAACAAATTAGGTTACGATTGTGAGTCTAGAAG
TAAATAGGCGCTGGAATTTTGAGGATATTCCATATTTTCAAATTTGATTTGATTTGTTTAAATT
TTAATTTAAAAGCTGTTATGGTAGATAATTAGGAATAGTTATTTGATTTAAATGTTATGGAATA
TTAGAAGGAAGATAAGGAATGTAGTTAGGAGGACTTATATTTGGCTTTGCTCATTTTACGGGAT
CGCATATAGGAGAGTATAATTTTTGGTTTAATTCATTGCCAAAATTAGGAGGTTATATTCTTGT
TGTGATTAAGACTGATTTAGTATATATTCTTCAATCAAATCGGGTAATTGAATCTCTTTTATGT
TAACTACATTGATTATCTGAATAATCTAACCGAGATTTGTGCGCTTGTTTGCAGGACCGGCAAA
ATTTGAAAGTTTTGAAAGAGAGGTTTGGGCCGAAAGAGAGAGAATAAATCGATTTGGCCCAAAG
ATCCGGACAAAAAAGCAG

Sequences
Splice junction sequence	GTTTGCAGGACCGGCAAAATTTGAAAGTTTTGAAAGAGAGGTTTGGGCCGAAAGAGAGAGAATA AATCGATTTGGCCCAAAGATCCGGACAAAAAAGCAGgatttcatgtagtgatcaagctcttctc tctctattctagagaaacttcatacacaaacacaactttcaactttcaggaccgttcgaagaaa ctgaaatt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GATTTCATGTAGTGATCAAGCTCTTCTCTCTCTATTCTAGAGAAACTTCATACACAAACACAAC TTTCAACTTTCAGGACCGTTCGAAGAAACTGAAATTAAAACATGGAAAGGTTCCAGTGGGGAAC ATCACCGTTGATATGGTATGGATTCTAATGTTTTTTGTGATTACACAAAGGCTTTATCTTTTAA ACATACTCGTATATATAGTTTTACATGTGGTATTTGTGAAGGTACTTGGTGGAATGAGAGGGAT GACCGGATTACACAATCGTAACCTCATTGCTTGATGCAGATGAGGTATGGTTATAAATTTGAAT CATATAGATAATCACAAGCTTTTGTTTCAAACTGGGAGTAGATAATTAAATCATATTATTTTTT CAAAATTTCTGTTATATAGATTGAAGGCTGAAGAACTGATGGCTTAAAGGACGAGTGAAGGCTG TTACCTCCGGAGACTGCTTAGTGATCACGGCTTTGAGCCACAACAGAGCTGGACCTCCACCGGA AAAGACCATTACTTTTTCTTCTCTTATGGCACCTAAGACGGTGAGTTTTAATCTGTTCTTTTAC CAGATATTAGTGTTTGAAACAAAAGCTTGTGATCATCCCAACCAAATGCTGAAGCTGAAAACTG AAATGAAAACATGTACATGTGAATCGACTGTTTGCTTGAGAGATAATGGTATGTGTGTGGTGAT GGTAAAAGATTTCGATTGTTTATATAGCACAAAACAAATTAGGTTACGATTGTGAGTCTAGAAG TAAATAGGCGCTGGAATTTTGAGGATATTCCATATTTTCAAATTTGATTTGATTTGTTTAAATT TTAATTTAAAAGCTGTTATGGTAGATAATTAGGAATAGTTATTTGATTTAAATGTTATGGAATA TTAGAAGGAAGATAAGGAATGTAGTTAGGAGGACTTATATTTGGCTTTGCTCATTTTACGGGAT CGCATATAGGAGAGTATAATTTTTGGTTTAATTCATTGCCAAAATTAGGAGGTTATATTCTTGT TGTGATTAAGACTGATTTAGTATATATTCTTCAATCAAATCGGGTAATTGAATCTCTTTTATGT TAACTACATTGATTATCTGAATAATCTAACCGAGATTTGTGCGCTTGTTTGCAGGACCGGCAAA ATTTGAAAGTTTTGAAAGAGAGGTTTGGGCCGAAAGAGAGAGAATAAATCGATTTGGCCCAAAG ATCCGGACAAAAAAGCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.170803837

Conservation Information
Conserved circRNAs	NA
PMCS	0.170803837

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to methyl jasmonate

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to methyl jasmonate

			
						 Other Information
					
						References
						Zhang et al., 2020

circRNA

Detail information of 2_circ_igg.16

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