Plant Circular RNA Database

Detail information of Os08g0253800_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os08g0253800_circ_g.1
					
						ID in PlantcircBase
						osa_circ_036531
					
						Alias
						Os_ciR848
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 9384408-9386143  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os08g0253800						
					
						Parent gene annotation
						
							Similar to Cellulose synthase-like family C3 protein (Fragment).
 (Os08t0253800-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						38/8
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0253800-01:2

General Information
CircRNA Name	Os08g0253800_circ_g.1
ID in PlantcircBase	osa_circ_036531
Alias	Os_ciR848
Organism	Oryza sativa
Position	chr8: 9384408-9386143 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os08g0253800
Parent gene annotation	Similar to Cellulose synthase-like family C3 protein (Fragment). (Os08t0253800-01)
Parent gene strand	+
Alternative splicing	NA
Support reads	38/8
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0253800-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTCCGGCGGCTGGATGGAGCGGACCACCGTCGAGGACATGGACATCGCCGTCCGCGCCCACCTC
AACGGCTGGAAGTTCATCTTCCTCAACGACGTCAAGgtgtatgagacgtcgatatcgcatgtgt
gccagatcgactggccgcgggagaggatgctggtgcaagtgctggacgactcggacgacgagac
gtgccaga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 245
Transcript exons: 9384408-9384564,9386056-9386143
GTGTATGAGACGTCGATATCGCATGTGTGCCAGATCGACTGGCCGCGGGAGAGGATGCTGGTGC
AAGTGCTGGACGACTCGGACGACGAGACGTGCCAGATGCTGATCAAGGCGGAGGTGACCAAGTG
GAGCCAGCGCGGCGTCAACATCATCTACCGATGGAGCGGACCACCGTCGAGGACATGGACATCG
CCGTCCGCGCCCACCTCAACGGCTGGAAGTTCATCTTCCTCAACGACGTCAAG
Transcript length: 301
Transcript exons: 9384408-9384543,9385979-9386143
GTGTATGAGACGTCGATATCGCATGTGTGCCAGATCGACTGGCCGCGGGAGAGGATGCTGGTGC
AAGTGCTGGACGACTCGGACGACGAGACGTGCCAGATGCTGATCAAGGCGGAGGTGACCAAGTG
GAGCCAGCGTCTACCTCAGCTTCTTCGGGTTCAACGGCACCGCCGGCGTGTGGCGCATCAAGGC
CCTCGAGGACTCCGGCGGCTGGATGGAGCGGACCACCGTCGAGGACATGGACATCGCCGTCCGC
GCCCACCTCAACGGCTGGAAGTTCATCTTCCTCAACGACGTCAAG
Transcript length: 600
Transcript exons: 9384408-9384716,9385853-9386143
GTGTATGAGACGTCGATATCGCATGTGTGCCAGATCGACTGGCCGCGGGAGAGGATGCTGGTGC
AAGTGCTGGACGACTCGGACGACGAGACGTGCCAGATGCTGATCAAGGCGGAGGTGACCAAGTG
GAGCCAGCGCGGCGTCAACATCATCTACCGCCACCGCCTCAACCGCACCGGTTACAAGGCCGGC
AACCTCAAGTCCGCCATGAGCTGCGACTACGTCCGCGACTACGAGTTCGTCGCCATCTTCGACG
CTGACTTCCAGCCTAACCCCGACTTCCTCAAGCTCACCGTCCCACACTTCAAGGGAAACCCGGA
GCTAGGGCTGGTGCAGGCGCGGTGGAGCTTCGTGAACAAGGACGAGAACCTGCTGACCCGGCTG
CAGAACATAAACCTGTGCTTCCACTTCGAGGTGGAGCAGCAGGTGAATGGCGTCTACCTCAGCT
TCTTCGGGTTCAACGGCACCGCCGGCGTGTGGCGCATCAAGGCCCTCGAGGACTCCGGCGGCTG
GATGGAGCGGACCACCGTCGAGGACATGGACATCGCCGTCCGCGCCCACCTCAACGGCTGGAAG
TTCATCTTCCTCAACGACGTCAAG
						
					

						Genomic sequence
						
							GTGTATGAGACGTCGATATCGCATGTGTGCCAGATCGACTGGCCGCGGGAGAGGATGCTGGTGC
AAGTGCTGGACGACTCGGACGACGAGACGTGCCAGATGCTGATCAAGGCGGAGGTGACCAAGTG
GAGCCAGCGCGGCGTCAACATCATCTACCGCCACCGCCTCAACCGCACCGGTTACAAGGCCGGC
AACCTCAAGTCCGCCATGAGCTGCGACTACGTCCGCGACTACGAGTTCGTCGCCATCTTCGACG
CTGACTTCCAGCCTAACCCCGACTTCCTCAAGCTCACCGTCCCACACTTCAAGGTAATATACAT
ACCCCTTCATTCTAAAGAAAAGTCCAATCCTATCATTGAATCTGGACGTAGCTAGAGTTTGTCT
TTTTTTTTTTAGACAGAGTAGTAAATAGTACATGTCACACTCTTCATCTTCTTTAAGCAATATA
TATGTGGAGATTTCGTTGAGCAACTGAAATCATCCGATTTCTGCAACAAACCGTACACTGATTG
AGTAATATCGAAACACTCTTCTGCACCCTGTTTATAAATTGATACTAGCTAGTCTAATAGTATA
TGTGCCAAATGTGCATATATATAAGTATATGTCCAATGGGATTGAAAGATGTGTGCCTTCAGTT
CCAAGTCTCAGATCTCAATGGCCAGAGGATTGCATTACTATAAGTTAGCCAGTGTTGAATCGCG
GGTAGAAATATTCCCTAAGAGCTCGAGATCAGTATAGTATACAAATGTGTTGAGATTATGCTTT
GGTATTAGAGCCTAATAAAAGCCATGGCGACTTACAAGGTCTGTAATAAACCTCTGCCTAATTA
ATTAGTTAGTGATTATTTATAATAGTACTACTACTAACAACATGTTAAGAGGGGTATACTATTT
GGACTTTGGACATGCAAGTAATAAGCGTTTCTGCAGTTAGGGCATGCATGCATGGACCATGTAA
GTCCAAATCATAGATTCGGTACAGTAGTTGACCTCCAAAGATTGGCTCTCCTTTTGACTAAACT
GATGCGTGCGTTCACATTACTATACATGTTGCACAACTGCCGAATCTAGCGATACAGTAGTCTC
ATCTTTAGAATAAACTTAACTTCATGATGCAAAATATGGGACCCATCAGTCAGTGAGACACATT
ATCACAATCCATTAATATAAAGGGTCTCTTATGTTTCATTAATTTTATGCATGGATTATACATT
TTTAGACCGTTTTAGATCGGAGATCTACAAGTCGCGAAAGATGAGGCTAATACATATCGAATCC
CAAGGTCAATGGAATCATTTTGTGATTTAATTTGCTTCTTCTAGAATAACCAATTAATTAATTA
ATTAATTAACAAGCGGATAATTAGGTCAAACATGTTGGAGATCGATCAATCAAACAAACTAAAC
TAAATCGAAATGAAATTTTGTGTACGTATTACAATAGGGAAACCCGGAGCTAGGGCTGGTGCAG
GCGCGGTGGAGCTTCGTGAACAAGGACGAGAACCTGCTGACCCGGCTGCAGAACATAAACCTGT
GCTTCCACTTCGAGGTGGAGCAGCAGGTGAATGGCGTCTACCTCAGCTTCTTCGGGTTCAACGG
CACCGCCGGCGTGTGGCGCATCAAGGCCCTCGAGGACTCCGGCGGCTGGATGGAGCGGACCACC
GTCGAGGACATGGACATCGCCGTCCGCGCCCACCTCAACGGCTGGAAGTTCATCTTCCTCAACG
ACGTCAAG
						
					

			
		

Sequences
Splice junction sequence	CTCCGGCGGCTGGATGGAGCGGACCACCGTCGAGGACATGGACATCGCCGTCCGCGCCCACCTC AACGGCTGGAAGTTCATCTTCCTCAACGACGTCAAGgtgtatgagacgtcgatatcgcatgtgt gccagatcgactggccgcgggagaggatgctggtgcaagtgctggacgactcggacgacgagac gtgccaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 245 Transcript exons: 9384408-9384564,9386056-9386143 GTGTATGAGACGTCGATATCGCATGTGTGCCAGATCGACTGGCCGCGGGAGAGGATGCTGGTGC AAGTGCTGGACGACTCGGACGACGAGACGTGCCAGATGCTGATCAAGGCGGAGGTGACCAAGTG GAGCCAGCGCGGCGTCAACATCATCTACCGATGGAGCGGACCACCGTCGAGGACATGGACATCG CCGTCCGCGCCCACCTCAACGGCTGGAAGTTCATCTTCCTCAACGACGTCAAG Transcript length: 301 Transcript exons: 9384408-9384543,9385979-9386143 GTGTATGAGACGTCGATATCGCATGTGTGCCAGATCGACTGGCCGCGGGAGAGGATGCTGGTGC AAGTGCTGGACGACTCGGACGACGAGACGTGCCAGATGCTGATCAAGGCGGAGGTGACCAAGTG GAGCCAGCGTCTACCTCAGCTTCTTCGGGTTCAACGGCACCGCCGGCGTGTGGCGCATCAAGGC CCTCGAGGACTCCGGCGGCTGGATGGAGCGGACCACCGTCGAGGACATGGACATCGCCGTCCGC GCCCACCTCAACGGCTGGAAGTTCATCTTCCTCAACGACGTCAAG Transcript length: 600 Transcript exons: 9384408-9384716,9385853-9386143 GTGTATGAGACGTCGATATCGCATGTGTGCCAGATCGACTGGCCGCGGGAGAGGATGCTGGTGC AAGTGCTGGACGACTCGGACGACGAGACGTGCCAGATGCTGATCAAGGCGGAGGTGACCAAGTG GAGCCAGCGCGGCGTCAACATCATCTACCGCCACCGCCTCAACCGCACCGGTTACAAGGCCGGC AACCTCAAGTCCGCCATGAGCTGCGACTACGTCCGCGACTACGAGTTCGTCGCCATCTTCGACG CTGACTTCCAGCCTAACCCCGACTTCCTCAAGCTCACCGTCCCACACTTCAAGGGAAACCCGGA GCTAGGGCTGGTGCAGGCGCGGTGGAGCTTCGTGAACAAGGACGAGAACCTGCTGACCCGGCTG CAGAACATAAACCTGTGCTTCCACTTCGAGGTGGAGCAGCAGGTGAATGGCGTCTACCTCAGCT TCTTCGGGTTCAACGGCACCGCCGGCGTGTGGCGCATCAAGGCCCTCGAGGACTCCGGCGGCTG GATGGAGCGGACCACCGTCGAGGACATGGACATCGCCGTCCGCGCCCACCTCAACGGCTGGAAG TTCATCTTCCTCAACGACGTCAAG
Genomic sequence	GTGTATGAGACGTCGATATCGCATGTGTGCCAGATCGACTGGCCGCGGGAGAGGATGCTGGTGC AAGTGCTGGACGACTCGGACGACGAGACGTGCCAGATGCTGATCAAGGCGGAGGTGACCAAGTG GAGCCAGCGCGGCGTCAACATCATCTACCGCCACCGCCTCAACCGCACCGGTTACAAGGCCGGC AACCTCAAGTCCGCCATGAGCTGCGACTACGTCCGCGACTACGAGTTCGTCGCCATCTTCGACG CTGACTTCCAGCCTAACCCCGACTTCCTCAAGCTCACCGTCCCACACTTCAAGGTAATATACAT ACCCCTTCATTCTAAAGAAAAGTCCAATCCTATCATTGAATCTGGACGTAGCTAGAGTTTGTCT TTTTTTTTTTAGACAGAGTAGTAAATAGTACATGTCACACTCTTCATCTTCTTTAAGCAATATA TATGTGGAGATTTCGTTGAGCAACTGAAATCATCCGATTTCTGCAACAAACCGTACACTGATTG AGTAATATCGAAACACTCTTCTGCACCCTGTTTATAAATTGATACTAGCTAGTCTAATAGTATA TGTGCCAAATGTGCATATATATAAGTATATGTCCAATGGGATTGAAAGATGTGTGCCTTCAGTT CCAAGTCTCAGATCTCAATGGCCAGAGGATTGCATTACTATAAGTTAGCCAGTGTTGAATCGCG GGTAGAAATATTCCCTAAGAGCTCGAGATCAGTATAGTATACAAATGTGTTGAGATTATGCTTT GGTATTAGAGCCTAATAAAAGCCATGGCGACTTACAAGGTCTGTAATAAACCTCTGCCTAATTA ATTAGTTAGTGATTATTTATAATAGTACTACTACTAACAACATGTTAAGAGGGGTATACTATTT GGACTTTGGACATGCAAGTAATAAGCGTTTCTGCAGTTAGGGCATGCATGCATGGACCATGTAA GTCCAAATCATAGATTCGGTACAGTAGTTGACCTCCAAAGATTGGCTCTCCTTTTGACTAAACT GATGCGTGCGTTCACATTACTATACATGTTGCACAACTGCCGAATCTAGCGATACAGTAGTCTC ATCTTTAGAATAAACTTAACTTCATGATGCAAAATATGGGACCCATCAGTCAGTGAGACACATT ATCACAATCCATTAATATAAAGGGTCTCTTATGTTTCATTAATTTTATGCATGGATTATACATT TTTAGACCGTTTTAGATCGGAGATCTACAAGTCGCGAAAGATGAGGCTAATACATATCGAATCC CAAGGTCAATGGAATCATTTTGTGATTTAATTTGCTTCTTCTAGAATAACCAATTAATTAATTA ATTAATTAACAAGCGGATAATTAGGTCAAACATGTTGGAGATCGATCAATCAAACAAACTAAAC TAAATCGAAATGAAATTTTGTGTACGTATTACAATAGGGAAACCCGGAGCTAGGGCTGGTGCAG GCGCGGTGGAGCTTCGTGAACAAGGACGAGAACCTGCTGACCCGGCTGCAGAACATAAACCTGT GCTTCCACTTCGAGGTGGAGCAGCAGGTGAATGGCGTCTACCTCAGCTTCTTCGGGTTCAACGG CACCGCCGGCGTGTGGCGCATCAAGGCCCTCGAGGACTCCGGCGGCTGGATGGAGCGGACCACC GTCGAGGACATGGACATCGCCGTCCGCGCCCACCTCAACGGCTGGAAGTTCATCTTCCTCAACG ACGTCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_017704 						
					
						PMCS
						0.279007791

Conservation Information
Conserved circRNAs	osi_circ_017704
PMCS	0.279007791

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							9384463-9386140(+)
9385975-9384510(+)
9384433-9385867(-)
9384561-9385983(-)
						
						Potential amino acid sequence
						
							MLVQVLDDSDDETCQMLIKAEVTKWSQRGVNIIYRHRLNRTGYKAGNLKSAMSCDYVRDYEFVA
IFDADFQPNPDFLKLTVPHFKGNPELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGV
YLSFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLNGWKFIFLNDVKVYETSISHVC
QIDWPRERMLVQVLDDSDDETCQMLIKAEVTKWSQRGVNIIYRHRLNRTGYKAGNLKSAMSCDY
VRDYEFVAIFDADFQPNPDFLKLTVPHFKGNPELGLVQARWSFVNKDENLLTRLQNINLCFHFE
VEQQVNGVYLSFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLNGWKFIFLNDVKVY
ETSISHVCQIDWPRERMLVQVLDDSDDETCQMLIKAEVTKWSQRGVNIIYRHRLNRTGYKAGNL
KSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKGNPELGLVQARWSFVNKDENLLTRLQN
INLCFHFEVEQQVNGVYLSFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLNGWKFI
FLNDVKVYETSISHVCQIDWPRERMLVQVLDDSDDETCQMLIKAEVTKWSQRGVNIIYRHRLNR
TGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKGNPELGLVQARWSFVNKDE
NLLTRLQNINLCFHFEVEQQVNGVYLSFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRA
HLNGWKFIFLNDVK(+)
MASTSASSGSTAPPACGASRPSRTPAAGWSGPPSRTWTSPSAPTSTAGSSSSSTTSRCMRRRYR
MCARSTGRGRGCWCKCWTTRTTRRARC*(+)
MRYRRLIHLDVVEEDELPAVEVGADGDVHVLDGGPLHPAAGVLEGLDAPHAGGAVEPEEAEVDA
IHLLLHLEVEAQVYVLQPGQQVLVLVHEAPPRLHQP*(-)
MMLTPRWLHLVTSALISIWHVSSSESSSTCTSILSRGQSIWHTCDIDVSYTLTSLRKMNFQPLR
WARTAMSMSSTVVRSIQPPESSRALMRHTPAVPLNPKKLR*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	9384463-9386140(+) 9385975-9384510(+) 9384433-9385867(-) 9384561-9385983(-)
Potential amino acid sequence	MLVQVLDDSDDETCQMLIKAEVTKWSQRGVNIIYRHRLNRTGYKAGNLKSAMSCDYVRDYEFVA IFDADFQPNPDFLKLTVPHFKGNPELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGV YLSFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLNGWKFIFLNDVKVYETSISHVC QIDWPRERMLVQVLDDSDDETCQMLIKAEVTKWSQRGVNIIYRHRLNRTGYKAGNLKSAMSCDY VRDYEFVAIFDADFQPNPDFLKLTVPHFKGNPELGLVQARWSFVNKDENLLTRLQNINLCFHFE VEQQVNGVYLSFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLNGWKFIFLNDVKVY ETSISHVCQIDWPRERMLVQVLDDSDDETCQMLIKAEVTKWSQRGVNIIYRHRLNRTGYKAGNL KSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKGNPELGLVQARWSFVNKDENLLTRLQN INLCFHFEVEQQVNGVYLSFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLNGWKFI FLNDVKVYETSISHVCQIDWPRERMLVQVLDDSDDETCQMLIKAEVTKWSQRGVNIIYRHRLNR TGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKGNPELGLVQARWSFVNKDE NLLTRLQNINLCFHFEVEQQVNGVYLSFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRA HLNGWKFIFLNDVK(+) MASTSASSGSTAPPACGASRPSRTPAAGWSGPPSRTWTSPSAPTSTAGSSSSSTTSRCMRRRYR MCARSTGRGRGCWCKCWTTRTTRRARC(+) MRYRRLIHLDVVEEDELPAVEVGADGDVHVLDGGPLHPAAGVLEGLDAPHAGGAVEPEEAEVDA IHLLLHLEVEAQVYVLQPGQQVLVLVHEAPPRLHQP(-) MMLTPRWLHLVTSALISIWHVSSSESSSTCTSILSRGQSIWHTCDIDVSYTLTSLRKMNFQPLR WARTAMSMSSTVVRSIQPPESSRALMRHTPAVPLNPKKLR*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os08g0253800_circ_g.1

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