Detail information of Zm00001d021142_circ_g.1


General Information
CircRNA Name Zm00001d021142_circ_g.1
ID in PlantcircBase zma_circ_009389
Alias zma_circ_0002576
Organism Zea mays
Position chr7: 143942264-143944771  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d021142
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d021142_T003:5
Zm00001d021142_T001:5
Zm00001d021142_T006:5
Zm00001d021142_T005:5
Zm00001d021142_T004:5
Zm00001d021142_T002:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAACTGCCTGTTACAGATGCCCAGTCGCCTGCTAGTTCTTCTGGTCATTTTATTGCTGGAAAT
TTTGACAACACACATCCAACATCTTCCGCCACTTCGccaatccgatggggtatgaagagagcaa
aaaacatctcctcagtctcagctaccctgagctgcaatgtttgtgcaaaaggtataaccttcct
gctaagaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1499
Transcript exons: 143942264-143942406,143942530-143942590,143942723-143942
838,143943510-143944413,143944497-143944771
CCAATCCGATGGGGTATGAAGAGAGCAAAAAACATCTCCTCAGTCTCAGCTACCCTGAGCTGCA
ATGTTTGTGCAAAAGGTATAACCTTCCTGCTAAGAAGACCCACTCTCAGTTAGCAAGTTCGCTC
GCCTCGCTGCTTGAGGCATCTCCATCTCCTGCTCCTCCTCCTGTCCAATTAGCAAATATGAAAG
AAGCATCCACATGCAATCATGCTAACAACAAAAGAGGCCCATACAATGGCAGGGATGATGGTAA
ACCACTTGTGCATGCGAAACATCAAAAAGGAGATCAGACACCTGTTGATGAAACATCTAAAAAG
CAGGGGATTGACACTGGTACGAGTATACCTCCAGTTTCTATGAACCATGGAAGACCAGAATATC
ATGGCCATCTATCTTCTGACCTGAGAACTGCTCATAATTTACAGTCCCAATGTGACGTGGGAAT
TGCAACTAATACAACAAATCTAGAATTTGTTGGCAAACATGATTGTTCACCTGCTAACGTAATT
GATCAAATCTGTCCCCCTATTATTCAAAAATATCCTTCTAATGGTAATGGTCAGGCTTCCACTA
AGTTCGGCCGTATGAATGATAACACAGAAAAGGGTTGTCGGCTGTCTGATAAGATATCAGCAAA
TGCTGCTGCTGTTCAATTTTCTGTAATGTCAGATGAGGGCATTGATCTTCTTGTTGATCTGAAC
TCCAGTTCAGCAACATGGGCCAAGAACTTCATGGCAGAAATGCACATTACCCCTCCGTCTGAAC
ATGGGAATTTCTCTAGCTTCATTAGCAGTTTGTCAACTAAGGATGATCATAGCACTGCGTCACC
ATCTGGAAATATCATTGTTGACATTCAGAACAAGGGAGCTGAGAACATTGTTCCTTCCACTGAT
TCATCACTTGCTTCAGATGTTGGTGAGAGCTCCCGTTCAGTGCTCTATCCAGTTGATACGACTA
CTGTGAACTCAGTGTCATCCACGTCTACAGTGGCTGGTACCCCAGTTGAACTTTCTGGGTATCA
GGAGGGTGCTCCAGTGGTATGTTCTTCATGTTTAACAGCTGATGTTCAGAACAATGTGACATCT
GATATGCCAGGTGCTTCGGATAACGAGGTGCTTCCTCCAGAACCTGCTGATGTCTTTTTGCAGT
CTGAAAGAATCACTGCACCAGCTGTATGTGGTTCAGTGCAACCAATTGGCAATAAATGCACAAT
GAGTTCTGGGGATGAGGTTAGAAGTGGCTCCAATGAAGACTCCTGTCCAAAATCTTCAGGAAAA
CAAACTGGAGATGAAACCCTAATGGAAAATGAACCTGTGAAGGCAGTAGCAGTGGAAGAAAATA
TAGGTCGTGATGACAGTTTGTCCATTTCTTATCAACTAGCCTGTAAGACAGTAGCAGAACTGCC
TGTTACAGATGCCCAGTCGCCTGCTAGTTCTTCTGGTCATTTTATTGCTGGAAATTTTGACAAC
ACACATCCAACATCTTCCGCCACTTCG

Genomic sequence CCAATCCGATGGGGTATGAAGAGAGCAAAAAACATCTCCTCAGTCTCAGCTACCCTGAGCTGCA
ATGTTTGTGCAAAAGGTATAACCTTCCTGCTAAGAAGACCCACTCTCAGTTAGCAAGTTCGCTC
GCCTCGCTGCTTGAGGTAAGCATATATGTTATGTTTGGATTATAACTTTTACTTCAGAGTTCGC
CACAAGTATGAGCTAGTTTCATCATCTATTTAAATTCAGAATCTGGAAGGATGTAACTGTTTTA
TTCTACACAGGCATCTCCATCTCCTGCTCCTCCTCCTGTCCAATTAGCAAATATGAAAGAAGCA
TCCACATGTATGTACAGAAACTTTTTATGTTAAACTTAGTTGGCTGATTGTTTATGCTTGCACA
ATGGCTTATTTTTTCAGACTCTTTTGCTTTGAAAGATGATGCTTTAGGAATAATTGGCAACCTA
ATTAACTGCAGGCAATCATGCTAACAACAAAAGAGGCCCATACAATGGCAGGGATGATGGTAAA
CCACTTGTGCATGCGAAACATCAAAAAGGAGATCAGACACCTGTTGATGAAACATCTAAAAAGG
TAAGAAATTTCAACCATTGTTTTCTTTTATTGTTTCCCATGAAAAATTAATACCCGTTACTACT
AATGGGCTCATCTGTTATCCATAACTTTTTGCATGAACCCTACAAGTATATTGTTCCTTATTGA
TTTATTATTTTCTACTCAAGTTGTCTGATATTGGAAAGTTAAGAGAATTATAACTACCCCCCCC
CCCCCCCCCCCCAAAAAAAAAAACACATACACACAAAAGCACACAAACACAACCAAAAAACAAA
CAAAGAAGAAATAAAAAAGAATTCTTCCTAGTAAAACACAAGGATTCTAGTTTTAATATTTTTC
CAGGATCCTTTCATATGATTTTATGCAAACTGCCAATGCCTATTTAGGAATCATTTACACACTT
CCTGTTAATCTGGATTGCACCTGACCGTCCTAAATATGAGAGTGGCACTTCTTCTGCAGATGCC
TTTTGGATTCTGTTTTTCTATTTGTACTCTGTTTTGTGCCACCCAATTGTTGCTATGGATTATA
CTAGTATTTTTTTCTGTTTGCCGCAGTAGTAATTTGTTGCTTTATTTTCACTTGAAATGTAAGT
CTGTTTCATCATGTATCTGTGAATTGCTTTGCTCATTTGTATGTGTACTGGTTAAATGGATGTC
TTTATAATCCATTTTTCATCTATCCTGTAGCAGGGGATTGACACTGGTACGAGTATACCTCCAG
TTTCTATGAACCATGGAAGACCAGAATATCATGGCCATCTATCTTCTGACCTGAGAACTGCTCA
TAATTTACAGTCCCAATGTGACGTGGGAATTGCAACTAATACAACAAATCTAGAATTTGTTGGC
AAACATGATTGTTCACCTGCTAACGTAATTGATCAAATCTGTCCCCCTATTATTCAAAAATATC
CTTCTAATGGTAATGGTCAGGCTTCCACTAAGTTCGGCCGTATGAATGATAACACAGAAAAGGG
TTGTCGGCTGTCTGATAAGATATCAGCAAATGCTGCTGCTGTTCAATTTTCTGTAATGTCAGAT
GAGGGCATTGATCTTCTTGTTGATCTGAACTCCAGTTCAGCAACATGGGCCAAGAACTTCATGG
CAGAAATGCACATTACCCCTCCGTCTGAACATGGGAATTTCTCTAGCTTCATTAGCAGTTTGTC
AACTAAGGATGATCATAGCACTGCGTCACCATCTGGAAATATCATTGTTGACATTCAGAACAAG
GGAGCTGAGAACATTGTTCCTTCCACTGATTCATCACTTGCTTCAGATGTTGGTGAGAGCTCCC
GTTCAGTGCTCTATCCAGTTGATACGACTACTGTGAACTCAGTGTCATCCACGTCTACAGTGGC
TGGTACCCCAGTTGAACTTTCTGGGTATCAGGAGGGTGCTCCAGTGGTATGTTCTTCATGTTTA
ACAGCTGATGTTCAGAACAATGTGACATCTGATATGCCAGGTGCTTCGGATAACGAGGTGCTTC
CTCCAGAACCTGCTGATGTCTTTTTGCAGTCTGAAAGAATCACTGCACCAGCTGTATGTGGTTC
AGTGCAACCAATTGGCAATAAATGCACAATGAGTTCTGGTAAAACCAAAGTTTTTGCAAGATTT
GTTGCACTCGAAAATTTTTAGTTGCTGATACAGACAATATATCTACCTTTTTGTCAGGGGATGA
GGTTAGAAGTGGCTCCAATGAAGACTCCTGTCCAAAATCTTCAGGAAAACAAACTGGAGATGAA
ACCCTAATGGAAAATGAACCTGTGAAGGCAGTAGCAGTGGAAGAAAATATAGGTCGTGATGACA
GTTTGTCCATTTCTTATCAACTAGCCTGTAAGACAGTAGCAGAACTGCCTGTTACAGATGCCCA
GTCGCCTGCTAGTTCTTCTGGTCATTTTATTGCTGGAAATTTTGACAACACACATCCAACATCT
TCCGCCACTTCG
Conservation Information
Conserved circRNAs NA
PMCS 0.140485611
Functional Information
Coding potential Y
Potential coding position 143944690-143942279(+)
143942273-143942377(+)
143942300-143944719(-)
Potential amino acid sequence MPSRLLVLLVILLLEILTTHIQHLPPLRQSDGV*(+)
MGYEESKKHLLSLSYPELQCLCKRYNLPAKKTHSQLASSLASLLEASPSPAPPPVQLANMKEAS
TCNHANNKRGPYNGRDDGKPLVHAKHQKGDQTPVDETSKKQGIDTGTSIPPVSMNHGRPEYHGH
LSSDLRTAHNLQSQCDVGIATNTTNLEFVGKHDCSPANVIDQICPPIIQKYPSNGNGQASTKFG
RMNDNTEKGCRLSDKISANAAAVQFSVMSDEGIDLLVDLNSSSATWAKNFMAEMHITPPSEHGN
FSSFISSLSTKDDHSTASPSGNIIVDIQNKGAENIVPSTDSSLASDVGESSRSVLYPVDTTTVN
SVSSTSTVAGTPVELSGYQEGAPVVCSSCLTADVQNNVTSDMPGASDNEVLPPEPADVFLQSER
ITAPAVCGSVQPIGNKCTMSSGDEVRSGSNEDSCPKSSGKQTGDETLMENEPVKAVAVEENIGR
DDSLSISYQLACKTVAELPVTDAQSPASSSGHFIAGNFDNTHPTSSATSPIRWGMKRAKNISSV
SATLSCNVCAKGITFLLRRPTLS*(+)
MFFALFIPHRIGEVAEDVGCVLSKFPAIK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b