Plant Circular RNA Database

Detail information of Zm00001d021421_circ_g.1

			
						 General Information
					
						CircRNA Name
						Zm00001d021421_circ_g.1
					
						ID in PlantcircBase
						zma_circ_002578
					
						Alias
						circ1211
					
						Organism
						
							Zea mays						
					
						Position
						
							chr7: 151706792-151710427  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Zm00001d021421						
					
						Parent gene annotation
						
							 UDP-glucose pyrophosphorylase2
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Zm00001d021421_circ_g.2 						
					
						Support reads
						3
					
						Tissues
						seedling leaves
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-CA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d021421_T013:16
Zm00001d021421_T001:15
Zm00001d021421_T015:9
Zm00001d021421_T022:5
Zm00001d021421_T003:15
Zm00001d021421_T006:15
Zm00001d021421_T008:16
Zm00001d021421_T020:16
Zm00001d021421_T007:15
Zm00001d021421_T004:16
Zm00001d021421_T011:9
Zm00001d021421_T017:9
Zm00001d021421_T018:14
Zm00001d021421_T002:16
Zm00001d021421_T016:5
Zm00001d021421_T012:16
Zm00001d021421_T005:16
Zm00001d021421_T009:11
Zm00001d021421_T014:16
Zm00001d021421_T010:16
Zm00001d021421_T021:16
Zm00001d021421_T019:10

General Information
CircRNA Name	Zm00001d021421_circ_g.1
ID in PlantcircBase	zma_circ_002578
Alias	circ1211
Organism	Zea mays
Position	chr7: 151706792-151710427 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	CIRI
Parent gene	Zm00001d021421
Parent gene annotation	UDP-glucose pyrophosphorylase2
Parent gene strand	-
Alternative splicing	Zm00001d021421_circ_g.2
Support reads	3
Tissues	seedling leaves
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-CA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d021421_T013:16 Zm00001d021421_T001:15 Zm00001d021421_T015:9 Zm00001d021421_T022:5 Zm00001d021421_T003:15 Zm00001d021421_T006:15 Zm00001d021421_T008:16 Zm00001d021421_T020:16 Zm00001d021421_T007:15 Zm00001d021421_T004:16 Zm00001d021421_T011:9 Zm00001d021421_T017:9 Zm00001d021421_T018:14 Zm00001d021421_T002:16 Zm00001d021421_T016:5 Zm00001d021421_T012:16 Zm00001d021421_T005:16 Zm00001d021421_T009:11 Zm00001d021421_T014:16 Zm00001d021421_T010:16 Zm00001d021421_T021:16 Zm00001d021421_T019:10

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAAACAGTAAGAGAAGATGTTCAGGTTAATGAAGGATACCTCAATTTGAATCACAATAAGGTCA
AGGAATGTGAACCCATTGCGGACTTCAATGACAGACccttgttctcaagtacgtctccatctgg
aatctccaacttcactccaggcttggcgataattgtcaccttgccctagaaatagcaccaacaa
tatgaatc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CCTTGTTCTCAAGTACGTCTCCATCTGGAATCTCCAACTTCACTCCAGGCTTGGCGATAATTGT
CACCTTGCCCTAGAAATAGCACCAACAATATGAATCAGGCACTACTCAGTAACACATATGCCAC
AGCTGAACTAGGAGGCGGTATGGAGTGGAATGAGCAGATACAAGATCAGATCAGACAGAAACAA
CTGACAAAATTTGCACCAGGTATACAAGATCAGATCAGACAGAAACAGCCAACGAAATTTGCAC
CAGGTATTCATGTCCAAATACAAACAGTATTTAAGCAGCACCAGCACATATGGCAACAAAGGAG
AAAATCCAAATACAAAGAGTACCTAAGCAGCACATACGGCAACAAAGGAGAAAGAAGAACATCA
AATTAAAGTTTACCTTGAGTGTAATTCCAGAGCCAAACCAGACATCACCAGACACCTTCAAGCT
GTCAAGCTCAACTATGCTGGGGATGGACTTGAACCGAGCAAGGAAATTGGCAACCTGTATTAGG
AAGGAGATATTTCATCAGTGCTTGCTGTGATCTGACACCAGTTAAGGAGTGACAATTTTTACTG
ATCAATGGTTTCATCAGTGTTTCCCCTATATTAATTAATAAAAAAACGGCAGATCCTGCCAGTT
TACGTTAAAAAAATGGTTTCATCAACACATTATTTTGTGAAGGAGCATTCTCAATGCTACTGAT
GGAACTCTATTATGAAAGATAAAACAGTCTGATCTTTATTTTGTGAAGGAGCATTCTCAATGCT
ACTGATGGAACTCTATTATGAAAGGTATCTTCAATATCTTGGAGACAAACTGTTTTACCTTCTT
GAACTCAGGTCCAAGCTCAATTGAAGGGTTAGCTGGATTCGCTCTGGATGGGTTGCGGATGACA
AAGCCATCAACCAAGGTGTAAAGATCAGACTGTAAACACAAAACGAGCAAAGCATTGAGCCATC
AACAAAGTTGAGGTATTACGGTATCAGGCTAACAAAACATTGAGATGCATCCAGAAATACCTGC
ACAAGCAACAGATCAGATGTAGCCTTCACTGGGAGAAACCTTGAGCGGGGAACATTAATTCCAA
TCGCTTTGTCGAAGAACTAGTTAAAGGTAACAAAAACATTAGAGCAAGAATATAAGGAAAAAAA
TGGAATAAAACTGAGTACTGGGACAGGGAGTTGCTTGCATACCCGAATAGCTGCACCAGCTGCG
GTTTCGAGTTGAAGGACTTTCACACCATCAACTTCCTGTAAGTGCCAACTTCTTAGTAGAAGAA
CCCAACATTTGTAATAGCACTCAACAAAGAATCTGATTGATGCACTACAATATAAATGCTACAA
AAAGGATATAAAAGATTAAGATAGGTGACATACCTTGGGGTTTGGAATAATTTCCATCTTAAGT
GCCTCAGCCTCTACGAGTCTCTTGATAGCTTTAAGGTTCACCCACCTGTTGGGCAAGAACTGTT
AGAGAAAGAGATTTTTCCCTTAAAAGGCAGTTAGGCCAGGTTTCTTACAAGTTGTTAGTGTTGA
ATATCTTAAACTTCTCGATTGATTTAAATTCATTCACCTGGATAGAGATACAAGAAAATTAGAA
AAGGTTGTGTAGCTCTTACTACAAAAGGCTGGTGGTGAAATCATGGAACAGATTATGAAACTTA
AGTAACACAGAAACAGCAACATACATGCTCATCGGGTACTTGGGCAATCTCCAAAAGCTGCATA
AATATCATAAAAATGAATCAGTATCATCTTATGTTAGAATGCCAGAACAGGAAGCATAATTGTC
TGTCATAAATACAAAATTCTAACTTTCGAATATTATCAAAGACTCAAAACCTCTTGTGATGCTA
AAACCAGTAGCAGAATGGGCAATAAACTAGCAGGGTGCAGAGAAATTATTCAATTTGAGCAATG
GACAAGTGTACCTGAACTCTTCCTTCGTAAGAGATGAGAGTGCCACCCTTAACGTCAGCCAGCG
TCTTTGGAGTAACCTAGAATAAATACAGTTCTTGAGTTTTATGTTGCACAAACTCAACATGAGT
ATAAACAAGTCATTCTTCCATACCTCCATGCAGTACTCGTTCTGGTTATTGATCAGATGGTTTA
GGATCTCTGTGCTGATTAAGGATACAATTTTCAATTCAAAGCACACGGCAATAGTAAGTATTAA
AACAGGTATGCAAATTTGATCATCCTATTTGGATACTGATGTCGACTATAGCACCCAAGTTGTC
TGAGTTTGCAACAAAGACATACTCCTTGCCCTGATATAGGATTGGGAAACAGGTTAGCAAAATT
ACTGTAACAAAGCAACAAGATAAATGCTCAGTTAGAGTTATCAGTGTACTATTGTGGTTTCACT
TATTAATCCATATAAAGGTTCTGGAAGTTGCATAGTTATTTCAGTTTATATTCCATAGGAAGAA
AAGAGAAACAGCCTCAATATTCAATTTCCTTCAGAAACAAGCTTGCCTTTTATTTTGGCCAAAA
CATGCACTCTCCCTTTACATAGAAAGCATCGAAGGGCCTCAAACAGCAAAATATGATTTATGAA
TAACACACGACAATACTACATTGTAACAGAATATAATTTATTTTCCTCTCATGAAGTAACCCTT
CATAATGTAGAATACTACAGCAATTAATATTTAAGTGCAATCTAAACCTAAAAAGAATAATATC
TGGAAACCAGATTACAAAATCAGTTTCCAGATCACTTATGTTGCCAACTGCAAAGAGAAGCTTA
ATGTGACTTCTGCTTACCTGAGCCAATAAGATGTCAAGTTTTCCGCTGTTATTCAAAGAAGGAA
ACACATCACCATGACCAGGAGGATACCTTACACATCAAAAATCACAACAATCAGATGGGTATCA
CATTTATGTAAATACGCTATAAATGAGGTACAGTTCAAACTATATCTAAAAGTCTTCACCGTAA
ATAATCCAACAAGCAAGGTGATATTCCATTGTGAGTAGTCATTGCCTCATTGGAATAACATTTT
AACTTCTATAATAACCTAAGACAGAAAACTAACCAGCCATCCTTCCCAGATTTCCCTTTGCTGG
GAAGTGGCAAGAAGTCCTCGGTAACAATGCGAGGATACTGGCTCTGTAGAAGACAATGCAAATT
TATCAGCTAACATTGCTTTCCACTCCAAAATGCTATATACTTGAAACAGTGTAGTCGAAATATA
TATTAAAAAAACAGGCCGCAAACCTGATTGAAAGTATGAATTTCGATGTTGGAGTTGGAATACT
TCTCAACAATCTTCAGGGAAGAGAAAAGGTAAGCAAGCATGTAAGTACAACTCTAGGAACTCAT
CATTTAATGAACACAAAAGCATATTAGTACAAGTCTAAGAACTCATCAATTTAATGAAGACAAA
AGCAAAGGGAAAACAGAACCTTCTGTGTGTCATCATGGGTGTTGAAAGAGTTCATCAGAAGTAA
AGGGACATTGCATCCATACTTCTTGTTCAGGGACTGCAGAGACATGTAACGAATAAAGCATAGA
CTGATTCTTCCATATCCAAACAGTAAGAGAAGATGTTCAGGTTAATGAAGGATACCTCAATTTG
AATCACAATAAGGTCAAGGAATGTGAACCCATTGCGGACTTCAATGACAGAC
						
					

			
		

Sequences
Splice junction sequence	CAAACAGTAAGAGAAGATGTTCAGGTTAATGAAGGATACCTCAATTTGAATCACAATAAGGTCA AGGAATGTGAACCCATTGCGGACTTCAATGACAGACccttgttctcaagtacgtctccatctgg aatctccaacttcactccaggcttggcgataattgtcaccttgccctagaaatagcaccaacaa tatgaatc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCTTGTTCTCAAGTACGTCTCCATCTGGAATCTCCAACTTCACTCCAGGCTTGGCGATAATTGT CACCTTGCCCTAGAAATAGCACCAACAATATGAATCAGGCACTACTCAGTAACACATATGCCAC AGCTGAACTAGGAGGCGGTATGGAGTGGAATGAGCAGATACAAGATCAGATCAGACAGAAACAA CTGACAAAATTTGCACCAGGTATACAAGATCAGATCAGACAGAAACAGCCAACGAAATTTGCAC CAGGTATTCATGTCCAAATACAAACAGTATTTAAGCAGCACCAGCACATATGGCAACAAAGGAG AAAATCCAAATACAAAGAGTACCTAAGCAGCACATACGGCAACAAAGGAGAAAGAAGAACATCA AATTAAAGTTTACCTTGAGTGTAATTCCAGAGCCAAACCAGACATCACCAGACACCTTCAAGCT GTCAAGCTCAACTATGCTGGGGATGGACTTGAACCGAGCAAGGAAATTGGCAACCTGTATTAGG AAGGAGATATTTCATCAGTGCTTGCTGTGATCTGACACCAGTTAAGGAGTGACAATTTTTACTG ATCAATGGTTTCATCAGTGTTTCCCCTATATTAATTAATAAAAAAACGGCAGATCCTGCCAGTT TACGTTAAAAAAATGGTTTCATCAACACATTATTTTGTGAAGGAGCATTCTCAATGCTACTGAT GGAACTCTATTATGAAAGATAAAACAGTCTGATCTTTATTTTGTGAAGGAGCATTCTCAATGCT ACTGATGGAACTCTATTATGAAAGGTATCTTCAATATCTTGGAGACAAACTGTTTTACCTTCTT GAACTCAGGTCCAAGCTCAATTGAAGGGTTAGCTGGATTCGCTCTGGATGGGTTGCGGATGACA AAGCCATCAACCAAGGTGTAAAGATCAGACTGTAAACACAAAACGAGCAAAGCATTGAGCCATC AACAAAGTTGAGGTATTACGGTATCAGGCTAACAAAACATTGAGATGCATCCAGAAATACCTGC ACAAGCAACAGATCAGATGTAGCCTTCACTGGGAGAAACCTTGAGCGGGGAACATTAATTCCAA TCGCTTTGTCGAAGAACTAGTTAAAGGTAACAAAAACATTAGAGCAAGAATATAAGGAAAAAAA TGGAATAAAACTGAGTACTGGGACAGGGAGTTGCTTGCATACCCGAATAGCTGCACCAGCTGCG GTTTCGAGTTGAAGGACTTTCACACCATCAACTTCCTGTAAGTGCCAACTTCTTAGTAGAAGAA CCCAACATTTGTAATAGCACTCAACAAAGAATCTGATTGATGCACTACAATATAAATGCTACAA AAAGGATATAAAAGATTAAGATAGGTGACATACCTTGGGGTTTGGAATAATTTCCATCTTAAGT GCCTCAGCCTCTACGAGTCTCTTGATAGCTTTAAGGTTCACCCACCTGTTGGGCAAGAACTGTT AGAGAAAGAGATTTTTCCCTTAAAAGGCAGTTAGGCCAGGTTTCTTACAAGTTGTTAGTGTTGA ATATCTTAAACTTCTCGATTGATTTAAATTCATTCACCTGGATAGAGATACAAGAAAATTAGAA AAGGTTGTGTAGCTCTTACTACAAAAGGCTGGTGGTGAAATCATGGAACAGATTATGAAACTTA AGTAACACAGAAACAGCAACATACATGCTCATCGGGTACTTGGGCAATCTCCAAAAGCTGCATA AATATCATAAAAATGAATCAGTATCATCTTATGTTAGAATGCCAGAACAGGAAGCATAATTGTC TGTCATAAATACAAAATTCTAACTTTCGAATATTATCAAAGACTCAAAACCTCTTGTGATGCTA AAACCAGTAGCAGAATGGGCAATAAACTAGCAGGGTGCAGAGAAATTATTCAATTTGAGCAATG GACAAGTGTACCTGAACTCTTCCTTCGTAAGAGATGAGAGTGCCACCCTTAACGTCAGCCAGCG TCTTTGGAGTAACCTAGAATAAATACAGTTCTTGAGTTTTATGTTGCACAAACTCAACATGAGT ATAAACAAGTCATTCTTCCATACCTCCATGCAGTACTCGTTCTGGTTATTGATCAGATGGTTTA GGATCTCTGTGCTGATTAAGGATACAATTTTCAATTCAAAGCACACGGCAATAGTAAGTATTAA AACAGGTATGCAAATTTGATCATCCTATTTGGATACTGATGTCGACTATAGCACCCAAGTTGTC TGAGTTTGCAACAAAGACATACTCCTTGCCCTGATATAGGATTGGGAAACAGGTTAGCAAAATT ACTGTAACAAAGCAACAAGATAAATGCTCAGTTAGAGTTATCAGTGTACTATTGTGGTTTCACT TATTAATCCATATAAAGGTTCTGGAAGTTGCATAGTTATTTCAGTTTATATTCCATAGGAAGAA AAGAGAAACAGCCTCAATATTCAATTTCCTTCAGAAACAAGCTTGCCTTTTATTTTGGCCAAAA CATGCACTCTCCCTTTACATAGAAAGCATCGAAGGGCCTCAAACAGCAAAATATGATTTATGAA TAACACACGACAATACTACATTGTAACAGAATATAATTTATTTTCCTCTCATGAAGTAACCCTT CATAATGTAGAATACTACAGCAATTAATATTTAAGTGCAATCTAAACCTAAAAAGAATAATATC TGGAAACCAGATTACAAAATCAGTTTCCAGATCACTTATGTTGCCAACTGCAAAGAGAAGCTTA ATGTGACTTCTGCTTACCTGAGCCAATAAGATGTCAAGTTTTCCGCTGTTATTCAAAGAAGGAA ACACATCACCATGACCAGGAGGATACCTTACACATCAAAAATCACAACAATCAGATGGGTATCA CATTTATGTAAATACGCTATAAATGAGGTACAGTTCAAACTATATCTAAAAGTCTTCACCGTAA ATAATCCAACAAGCAAGGTGATATTCCATTGTGAGTAGTCATTGCCTCATTGGAATAACATTTT AACTTCTATAATAACCTAAGACAGAAAACTAACCAGCCATCCTTCCCAGATTTCCCTTTGCTGG GAAGTGGCAAGAAGTCCTCGGTAACAATGCGAGGATACTGGCTCTGTAGAAGACAATGCAAATT TATCAGCTAACATTGCTTTCCACTCCAAAATGCTATATACTTGAAACAGTGTAGTCGAAATATA TATTAAAAAAACAGGCCGCAAACCTGATTGAAAGTATGAATTTCGATGTTGGAGTTGGAATACT TCTCAACAATCTTCAGGGAAGAGAAAAGGTAAGCAAGCATGTAAGTACAACTCTAGGAACTCAT CATTTAATGAACACAAAAGCATATTAGTACAAGTCTAAGAACTCATCAATTTAATGAAGACAAA AGCAAAGGGAAAACAGAACCTTCTGTGTGTCATCATGGGTGTTGAAAGAGTTCATCAGAAGTAA AGGGACATTGCATCCATACTTCTTGTTCAGGGACTGCAGAGACATGTAACGAATAAAGCATAGA CTGATTCTTCCATATCCAAACAGTAAGAGAAGATGTTCAGGTTAATGAAGGATACCTCAATTTG AATCACAATAAGGTCAAGGAATGTGAACCCATTGCGGACTTCAATGACAGAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.004767143

Conservation Information
Conserved circRNAs	NA
PMCS	0.004767143

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chen et al., 2017b

circRNA

Detail information of Zm00001d021421_circ_g.1

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