Detail information of AT3G07940_circ_g.1


General Information
CircRNA Name AT3G07940_circ_g.1
ID in PlantcircBase ath_circ_020393
Alias 3:2530019-2530351
Organism Arabidpsis thaliana
Position chr3: 2530019-2530351  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G07940
Parent gene annotation Probable ADP-ribosylation factor GTPase-activating protein AGD11
Parent gene strand +
Alternative splicing NA
Support reads 2/1
Tissues seedling;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G07940.2:2
AT3G07940.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAACACGGCAGTGAACGAAAGATTCGAAGCTTGCAACATCGACCAGTCAAAGAAACCAAAACC
AGATTCTACTAATGAGGAACGAAATGATTTCATTAGatcgttgagtcttggtgtatttatctgc
attaagtgttctggtgtacacagaagtcttggagttcatatatcaaaggtactttcttttcata
gacaatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCGTTGAGTCTTGGTGTATTTATCTGCATTAAGTGTTCTGGTGTACACAGAAGTCTTGGAGTT
CATATATCAAAGGTACTTTCTTTTCATAGACAATCTTGATTTTTCTCTGCTTCTGTGTGTTTCT
AGAGTCTTTTATCGATAAATTTGATTGAATGATGATCGCAGGTTCTATCAGTAAAGCTAGACGA
GTGGACAGATGATCAGGTTGACATGCTTGTAGGTTACGGTGGAAACACGGCAGTGAACGAAAGA
TTCGAAGCTTGCAACATCGACCAGTCAAAGAAACCAAAACCAGATTCTACTAATGAGGAACGAA
ATGATTTCATTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.206120296
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020