Detail information of AT5G42080_circ_g.11


General Information
CircRNA Name AT5G42080_circ_g.11
ID in PlantcircBase ath_circ_041977
Alias Ath_circ_FC3632, Ath_circ_FC3633
Organism Arabidpsis thaliana
Position chr5: 16822446-16824040  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder
Parent gene AT5G42080
Parent gene annotation RSW9
Parent gene strand -
Alternative splicing AT5G42080_circ_g.1 AT5G42080_circ_g.2 AT5G42080_circ_g.3 AT5G42080_circ_g.4 AT5G42080_circ_g.5 AT5G42080_circ_g.6 AT5G42080_circ_g.7 AT5G42080_circ_g.8 AT5G42080_circ_g.9 AT5G42080_circ_g.10 AT5G42080_circ_g.12 AT5G42080_circ_g.13 AT5G42080_circ_g.14 AT5G42080_circ_g.15 AT5G42080_circ_g.16 AT5G42080_circ_g.17
Support reads 2
Tissues aerial, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT5G42080.4:8
AT5G42080.1:8
AT5G42080.2:8
AT5G42080.3:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAAAACTAAGTAAGAAGTGTTAACACTGTATTTACCAGATCCACGGGGTAAAAAGTCCTTTCC
CACGATGCTCTCCAGGACTGAAGACTTCCCTGAGCTcttggagagcatctttgccaaatgctcg
gaacccattttattagcaaggtgcctatactcagtagtattggaaaagtactccctctctcttt
tccgagcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 738
Transcript exons: 16822446-16822640,16822838-16822902,16822998-16823088,16
823262-16823323,16823449-16823499,16823584-16823685,1682
3773-16823880,16823977-16824040
CTTGGAGAGCATCTTTGCCAAATGCTCGGAACCCATTTTATTAGCAAGGTGCCTATACTCAGTA
GTATTGGAAAAGTACTCCCTCTCTCTTTTCCGAGCCGCAATCATGTCGACATTCTTGTTAATAT
CTGCTTGGGAACGGTTGACGACACCAACCCACGGATATTTAAGTTTAAAAGATCTCCCTTCCAG
AATTTCCACTGCATCCGTCCCCTTGTCCATAAGATCAATCTTTGTCAAGACACCAAATGTTCTG
TCCCCCGATGGATCAACCTCACGGGAAATTTTAATTGCATCTGAGGTAGCAAGATCTTGGTTTG
CAGGTGAGATTGCCAAAATGATGCAGTTGGGCTTTTCAATGTAGGACCGAACCATGTTTTCAAT
GTCCTTCACTATACTATCAGATTGTCCATCAACAGCAACTTTTGTAAGCCCTGGAAGATCTATC
AGTGTCAAGTTGACAACATTGGGAGAGTATATGCTAAGGTGAATGGGAACACTAGAAATAGCCT
TGCTGCGTCCAGTCTCTCTGTCAGTCTCATCTTGAATCTCCTTCCTCACAGCAGCAAAATCAGT
AAACTTTTTCCTCGGGAGGTGAAGAAACTCTGCATACTCCCGGGTTCCATCATCGATCTTTTGC
AACTGTAAGACAAGGGGCCTTCGAGTAACAATGCCAGATCCACGGGGTAAAAAGTCCTTTCCCA
CGATGCTCTCCAGGACTGAAGACTTCCCTGAGCT

Genomic sequence CTTGGAGAGCATCTTTGCCAAATGCTCGGAACCCATTTTATTAGCAAGGTGCCTATACTCAGTA
GTATTGGAAAAGTACTCCCTCTCTCTTTTCCGAGCCGCAATCATGTCGACATTCTTGTTAATAT
CTGCTTGGGAACGGTTGACGACACCAACCCACGGATATTTAAGTTTAAAAGATCTCCCTTCCAG
AATCTGAGCAAAAAATATCATTTGGTAAGTAGCGGTGCACGCAATAAACATTAATGAGGGAACA
TAAGTATTATGATGTTACTACACAAATTAGCATTTTATAGCTCCAACATCATATCATAGACTAA
TTACAACACATTTTATTCACAGTAATTCGAAATTCTAGTACAGATGTTCTATAAACTGGGAATT
CAACTTACTTCCACTGCATCCGTCCCCTTGTCCATAAGATCAATCTTTGTCAAGACACCAAATG
TTCTGTCCCCTGTGAAGATCACCAAGATTATAAGAGACATAGGATGACAGAATAATGTGTTGGG
TCTCTTAGGTGGAAAAATGAATTGTTTGTAAAATGCTCACCCGATGGATCAACCTCACGGGAAA
TTTTAATTGCATCTGAGGTAGCAAGATCTTGGTTTGCAGGTGAGATTGCCAAAATGATGCAGTT
GGGCTATAAGGAAATTTAATTAAATAAAAAAAAAAACAGAATAGTGTCAACTCATTTGGCGCTA
CGAAAACATAACAAATATAGGGAGAATACTTATATATTACCGAATCTAATTTAAACTGGCGATA
GCTATCTATAAAACATTAAAGGGTCTGGGAGTAAGCATTTTCATTTACCTTTTCAATGTAGGAC
CGAACCATGTTTTCAATGTCCTTCACTATACTATCAGATTGTCCATCTGCATCAACCAAAAGAA
ATTTGTCGTGTCATGCCAAATTATGTATGGTAGAGAATAAAGTCTATTGCCTCATGCTTCATCG
CTAGAAAAAATAGACCAAAACTTCTTGCTCTACTGTAACTTACCAACAGCAACTTTTGTAAGCC
CTGGAAGATCTATCAGTGTCAAGTTGACAACTGCACACATAGTAAAGAGGATAAAAAATTAGAG
AATGAACAAAAAGCACATACAACTGGAAAGAGATTTTGGGTTGTCCTTACCATTGGGAGAGTAT
ATGCTAAGGTGAATGGGAACACTAGAAATAGCCTTGCTGCGTCCAGTCTCTCTGTCAGTCTCAT
CTTGAATCTCCTTCCTCACAGCAGCTATAGAGGTGATTAAATTAATCAAATATCAATGGAATAC
AGGAGAAGGTGAAACTTGAACTGCAAATTGAGATAGCCGAAACCCACCAAAATCAGTAAACTTT
TTCCTCGGGAGGTGAAGAAACTCTGCATACTCCCGGGTTCCATCATCGATCTTTTGCAACTGTA
AGACAAGGGGCCTTCGAGTAACAATGCCTACAAATAGTTACCGCAAATGCATATTGTCATTACT
CAAGGAAATAAGCAATTTCATAATTAAAACTAAGTAAGAAGTGTTAACACTGTATTTACCAGAT
CCACGGGGTAAAAAGTCCTTTCCCACGATGCTCTCCAGGACTGAAGACTTCCCTGAGCT
Conservation Information
Conserved circRNAs NA
PMCS 0.321555962
Functional Information
Coding potential Y
Potential coding position 16823286-16822448(-)
Potential amino acid sequence MVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEG
RSFKLKYPWVGVVNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKSSG
KSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE
TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPN
CIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWV
GVVNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKSSGKSSVLESIVG
KDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKA
ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPAN
QDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADI
NKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKSSGKSSVLESIVGKDFLPRGSGI
VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSI
YSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIK
ISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR
KREREYFSNTTEYRHLANKMGSEHLAKMLSK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a