Detail information of BGIOSGA009496_circ_g.4


General Information
CircRNA Name BGIOSGA009496_circ_g.4
ID in PlantcircBase osi_circ_013861
Alias Chr03:38101015_38102096(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 39472170-39473251  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA009496
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA009496_circ_g.3 BGIOSGA009496_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA009496-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCAGGATCGCACTGTAGGTGATACTAACCTTGTCCATTTGCTCTGCTCCACAGGGTTCCATGC
CCTGGGTTTCGGCACATTGCAAGGCCCCACTGTTGCcctcgtaacgaggtttgggccgctgccc
attaacagataatggagtccattcttcgtgaacactgacagcactaagaccttccagaataaca
actttgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCGTAACGAGGTTTGGGCCGCTGCCCATTAACAGATAATGGAGTCCATTCTTCGTGAACACT
GACAGCACTAAGACCTTCCAGAATAACAACTTTGTCCTGTGTCTCCACTGAACTTCCATTCTCA
GATATGGTTTTAGGTTCTGGAACCGATGTTCCATTTGTTGAAGCCAGAATAACCTTGGGATCTT
CCTTTGGTTTCTTGTAAACAGAAATGCAGTAAGCAAAATGTTAAGTTTATTTCACAAACAATTT
ATTAATCAGGGCATTGAGATGAAACTACAGCTGATAGACCAATACTTTCAAAGATTAGAGTGAA
TTCTAAATAGATAGGCAAAAAAACATAAGAAATATACTTTTGACAGGAAACAACCCATGCGTAC
CCACTGCATTTATGAGGTTACAGAATGCAACTTACATGCATTTCAATATCTACAACAGGCTCAG
GGTTGAACTCAGGAACCCTTGAGTACCATCCAGGATCTTCCTCCTACCAAAATACCAGCGCATT
AAATCGTTGTGCACAGGGTGAAGAATACAATGTAAATAGTCATACCTCTAAGATTTTAACAAAC
AGCCGCATCGCCTCTGCCGATGGCATACTTCCAAGCCCATGCCAGCTGAAAATACAAATGTGTA
AAGAGACGATCATGCTTTAAAGACATGCAGTATCAACATTTGATTGAAGGTCTATGGATATTCC
TGCCACCGGTCAGCTCTCTAGCTTATCAGTCCAAAATTTAAATTACACAAGACAGAAATCCTCT
TCTAACTTCTGGGCATGTGATAGCATTCCGTTCTAATACTGGCCCAATGATAAGCAATAAAATA
AGGCAGCAGCACAAGACAGATAGCGACATCATCTTATATTAACTAATAACTAGCATGTGAAGTT
TCAACCTCCAATTCGATCACCAATGTTTCCGTTTCTCCATAAATTTAACCAGAACTATCAAGTT
CGCTAATACGGAGACAACTTCATGCAGGATCGCACTGTAGGTGATACTAACCTTGTCCATTTGC
TCTGCTCCACAGGGTTCCATGCCCTGGGTTTCGGCACATTGCAAGGCCCCACTGTTGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021