Detail information of BGIOSGA013983_circ_g.1


General Information
CircRNA Name BGIOSGA013983_circ_g.1
ID in PlantcircBase osi_circ_005276
Alias 3:40553767|40556615
Organism Oryza sativa ssp. indica
Position chr3: 40553767-40556615  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA013983
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA013983_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA013983-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTACCTGGGTTCCAAAAATTGGTGATCCTAATGGCCGTCCATTGGCTATGTTGCGGCCTAACA
CATCTCTTAGCGCTGCCCTGAATTTGCTGGTTCAAGgtttctttgtctgatggcattattcagg
aaggtcctcagagaatttcagaggcagctatacagatctctaggtgtcgtgtagcggattttct
gaatggac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTCTTTGTCTGATGGCATTATTCAGGAAGGTCCTCAGAGAATTTCAGAGGCAGCTATACAGA
TCTCTAGGTGTCGTGTAGCGGATTTTCTGAATGGACAAACTGGGTATGATTTACTCCCAGATTC
TGGCAAGGTATGGAAAATGAGCTCGTCTTGTATGAATTTTAGTGCTCTAATGGTTATTCTTATT
ACATTATATTTACAATTCAGGTCATTGCTCTAGACGTTAATTTGCCTGTGAAGCAATCTTTTCA
TATTCTTCATGAACAGGTGACTATGCCTTCTTCTGCTAGTTTCCCTCCAATCTTTCATTCTTCT
TCTGCTCTGTAGCCTGTTTCCCTCCAATCTTTCATTAGTTGTTCTGACATTGAACTAGTGATAT
TTTGCTTTGATCTGTAAATATAGTGGAATAGGTACATACCTTTTTAGTAAATATGTTGGCCTGT
TGTTGCGTACAATGTTTGGTTTCATTGGCAGCTTCAATTCATCTGAGATTGCATGAAAATGGAA
ACACTGCAGCCTCATGCCTTAAAAGTTGCAGCTACTTCACCTACTTCACACTTCTTGTACAACC
CAATGTTGCATCCTTCCTCTTGTACACATCACCTAGAATGCATGTGGTCAACCTTTAAAAGCTT
GAAAGAGCACTATATATGTAAAAACATTCACTTTAATTTATTAATCGATACATCATCAATGGGG
TCTAATTTTTGTTAAGATTTGATTAGAGCAAGTAATTGTCAAGGGTGATGATTGATGTGTCAGA
CATCCAATACAACAATTAGAAGAGGTTGGAGGAAGTAGGTTCTATTCTGTTTGCACTCCACAAT
TTCCATATAGGTTATAAGAAAGTTCAGCTCTGTGCTTTCTTAGCTGCCATCTTGATTCTGATTT
AATTATTTTTGGCATCTTGATATAACTGGAAATTTCATAGTTTCTTTAACCATATATATTGAAG
TACAAGAAATATTGGCTGGTTTTGGGAACATACATTAAATAAATAGTGTACCTTGCAGGGAATT
CCTGTGGCACCTCTATGGGATTCATTCAGGGGCCAGTTTGTTGGCCTTTTGAGCCCACTGGATT
TTATACTCATATTGAGAGAGGTAATTTATTCTGTCACTTACTGTTTGGTGTTAGTATTCTTTAA
TTATTTTTTTATGTGTCATTGTTGTTCTCTATTGTATATTTTTTATTGTTACAAGTGATGGTTT
AATGTTCATTTCAAATATGCTGCCACTTTTAGTGGCCCTGCAAAACGAAATTGCGCAATTCTTG
TTTTTTTTTAAAAAAAAAATCTGAAGCAGTGTAATATCATTCTTTGACAGTATTAAGTTATTGA
CCTAGAAGCTTATTTCACATGAATTATAAAGACGACTGGTTCATTAATGGAATGTGGGAGTCTA
TGCATTTGAACAATGTACCTGCTTGTAATCCCGATTCTGCTGTATCACTTAGTAACCATGCATC
TCATGGAACTTTGTTTGGGTGACCACAAGAAGTTCAGCCAAGATAGTGATCATGTTGAACTGTT
TTTCCCTTAATTGGAAGTGTTCAGTTAGTAGAACCTCCAAAAATTTGAAATCGTATCTTTTGGA
AGGTGGACTCTAGAAAATAGAAATAAATATGCTAGTAGTAGCGACTGCATCATGATACTTTATT
TTTATGCTGTTTGAATTGTTTCTGCTTCCAGGTAAAGGATTATTAATCCTGACCATGTGATTTG
TTACTTGAAACAATTTGTGAGCATATTCCAACAGAGTAGCATTTAATATCTTGTTTATATTGCA
GCTGGAAACTCATGGCTCCAATCTGACAGAAGAGCAGCTTGAAACACATACTATATCTGCGTGG
AAGGAGGCCAAGCGTCAAACTTATGCCAGAAACGAGGGTTCTTGGAGGGCAAATCACCATTTAG
TTCATGTGAGTTGTCCACTGTGTTTGTGAACCAATTGCAAATCTGTATGCACTCACCACAAATT
GAGACTGCTGCCATCAACTTCTATCTATATTTACTGGCCAAATTACACTCCAGTGAATTTTAGA
ATTCATGTATTGCATTCTAAGGATAATATTTTACCCTTTGATTTATTTGCATTTGACAAATTGT
TGTCAACAATTGTTGTGTGAGTACCACATAACAGTTTTTGGCACACCATGACACACATTTTTGT
CATAACATTTTTTGGCACACTATGACACATTTTACTTTTTGTGTTACAACTAAGTTATCTACTG
GATGCTGAAATATATTTTGCTTAATTAGCTTTAATTGCCATGCTCAAGTGAGTTACTTAGTGAA
CTGCAATTTGTTTGGTGTGAAATTTCATCGAACCCCTTGCATCAACTGTTCCTTTTCATTTCCA
TCCTAGTATTTTATAACATGCTTAGTTTTATAATGATCATGTGTCTCATGCACTTATGCTGGAG
TGAATCTATTGTTTAGGCCACCCCTTATGAATCCCTGAGGGAAATTGCTATGAAGATACTGCAA
AACGGTGTTTCTACCGTTCCAATTATGTTTTCCTCATCACCAGATGGCTCATATCCACAATTGT
TGCATCTTGCTTCCCTTTCTGGAATTTTGAAATGTAAGTGTTTCTATGTATTTGCATGAAAAGT
GTGCTATACACAAACATATTACATGATAGCTTAACAACATTTCATTTTCAGGTATTTGTAGATA
TTTTAAAAATTCTCAAGGTAATTTACCTATTTTGAGCCAACCTGTATGCACAATTCCTCTGGGT
ACCTGGGTTCCAAAAATTGGTGATCCTAATGGCCGTCCATTGGCTATGTTGCGGCCTAACACAT
CTCTTAGCGCTGCCCTGAATTTGCTGGTTCAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 40553788-40556479(-)
40556249-40553777(+)
Potential amino acid sequence MPSDKETLNQQIQGSAKRCVRPQHSQWTAIRITNFWNPGTQRNCAYRLAQNR*(-)
MKILQNGVSTVPIMFSSSPDGSYPQLLHLASLSGILKCICRYFKNSQGNLPILSQPVCTIPLGT
WVPKIGDPNGRPLAMLRPNTSLSAALNLLVQGFFV*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021