Detail information of AT3G07610_circ_g.4


General Information
CircRNA Name AT3G07610_circ_g.4
ID in PlantcircBase ath_circ_020327
Alias NA
Organism Arabidpsis thaliana
Position chr3: 2432575-2432661  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT3G07610
Parent gene annotation Transcription factor jumonji (JmjC) domain-containing protein
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G07610.3:1
AT3G07610.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATGGATAAGGATCTCGAACACATATCTTCAAGCGAAAAGAAgtcttccgaagccaaagtgga
gatatcaaatgggatagtcagtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCTTCCGAAGCCAAAGTGGAGATATCAAATGGGATAGTCAGTGCAATGGATAAGGATCTCGAA
CACATATCTTCAAGCGAAAAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.141534392
Functional Information
Coding potential Y
Potential coding position 2432621-2432658(+)
2432644-2432577(-)
Potential amino acid sequence MDKDLEHISSSEKKSSEAKVEISNGIVSAMDKDLEHISSSEKKSSEAKVEISNGIVSAMDKDLE
HISSSEKKSSEAKVEISNGIVSAMDKDLEHISSSEK(+)
MCSRSLSIALTIPFDISTLASEDFFSLEDMCSRSLSIALTIPFDISTLASEDFFSLEDMCSRSL
SIALTIPFDISTLASEDFFSLEDMCSRSLSIALTIPFDISTLASED(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017