Detail information of POPTR_0004s16840_circ_g.1


General Information
CircRNA Name POPTR_0004s16840_circ_g.1
ID in PlantcircBase pop_circ_001352
Alias Chr04:18184543-18184819
Organism Populus trichocarpa
Position chr4: 17198416-17198692  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ei-circRNA
Identification method CIRCexplorer
Parent gene POPTR_0004s16840
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues stem xylem
Exon boundary   No-Yes
Splicing signals   TG-GG
Number of exons covered POPTR_0004s16840.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCAAATCTAGCAAGTCAATCTCAGGAAAAATTCATACAAGATGTTCATTGAATAATATGTTT
CAAAAACTTGGTAAAGGAGCGATATTTCAGTATACCtaactaaacaattttggggaaaaaataa
cccatacaacatgataattatgttgtgaaatgcaattgaattgatccatgatcattcatgttta
gatcacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAACTAAACAATTTTGGGGAAAAAATAACCCATACAACATGATAATTATGTTGTGAAATGCAAT
TGAATTGATCCATGATCATTCATGTTTAGATCACATAATAAATATGACTGGGAATTCTCTAGGG
AATGCAAAAATCAAAGGAAATTAAATCAATATCATGCAATCGGAAGGAAAATCAAATCTAGCAA
GTCAATCTCAGGAAAAATTCATACAAGATGTTCATTGAATAATATGTTTCAAAAACTTGGTAAA
GGAGCGATATTTCAGTATACC
Conservation Information
Conserved circRNAs NA
PMCS 0.142598736
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Liu et al., 2021