Detail information of BGIOSGA016449_circ_ig.3


General Information
CircRNA Name BGIOSGA016449_circ_ig.3
ID in PlantcircBase osi_circ_014386
Alias Chr04:22109568_22112320(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 19605752-19608505  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016449_circ_ig.2 BGIOSGA016449_circ_ig.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGATTGTTTTTTAGATCATGACAGCCTGCGGAATGGATCAAAGAACACCTTAATGCATATTA
GAAACATCAGCGGTTCAGCATATGACTTATAGTTTGgtcttcagctatgcatcaagtaattaga
atgcaagaagaacatggaaatgaaggaatcttgaatatcatcatttcgcctctgcaaagtttca
gagatatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCTTCAGCTATGCATCAAGTAATTAGAATGCAAGAAGAACATGGAAATGAAGGAATCTTGAAT
ATCATCATTTCGCCTCTGCAAAGTTTCAGAGATATTAATGATGTAAGTATTTTATTTAATTTTT
AGTGAGGCATATATATAGGTGCTGCCATTCCCTTTCTGATTGAGAATTAAAAGGTGCATATAGA
TGCTAATATATGTTTTGTCCAATTCTTTGTTATGTTCATGTGATGGGGAGTATCTCAGTAGTGT
CGTTCAATCCATTCGGATCATTTTGCATATTATAGATGCTAAGTGCTTAGTGCTGATATATACT
CCATAAATGATATAGAGTTTATATAAAATAAACAGCATACACGCATGTCTCTATGCTGAGCTGC
TTAGTTACATCATGTGCATTTGTGCTCTCTTATCTATCTTGACTATGGGTTCATCACTGAAGAA
CTAGTGATGAGTATGTGCCATTTCTGGATCAAAGAGAAGTAGTGTCATTTAGATGTTATCAAGT
ATGAATACAGTTTCAAACTAGTAGGGAATGTGGAATTTTTAGACATGTTTAGGAGTGCAGGATT
TTTTTAATTGAACCATCTCTCTGAAACGTTAGATAATTAGAGCCCAATTTCTATGCACTACACT
CCATTTTCTCTTGTTCTTCATGATTCACTCTAAAATGTCCATTTTCCAGTGTCCCCCTTTTGTT
TTCTCTGCGGAAACAATTGAGCAAGTCAAAAGGAAGAGGAAGGAGTGATTAAGAATAATAGGAA
TGGGAGGCATTGGGAAACACTCAGCCAAATTTCCACCTCTATTGTCAGAGATGGAAACTAAAGG
TTTAGGTTTCCTCCATGTTCCCATTCCAACCATTCTTAGACCCTCTTTCTTCCTCTTCCCGACT
CACTGCCAAGGCATCTAAATGTGGACATGGATACATTTTGTTTTCTCTAGTAAATTGGTGTTAG
CTGAAAGTAAGAGGAACGAGCACCTAAGAACTATAGGAATGGGAGGCATCAGGAAAATCATCAG
ACCAAATCTCCAATACCAGAGGTTAGAGCTTAATTTGGCTTTCCTTCATGTTCCCATTCCTACT
GCTCTTAGAGTCTCTCTTCCTCTTCCTGGCTCACCCTCTTTTTGGCACACAGCTACAAGAAACA
GAAGCTTGAACATTTTCTTCAGAGTACTAGAGTATATATAGACCTATGCAGTGCAGGGCTGTGA
AGGATAAATGAATTGAATCTGGTAGATGGTGCACAATAGGACACTGAAGTGAATGATCACATAT
ATTGGCCAAGAAACATGTACAAGTCACTGTACAACATCTGCAGGGATGTGATCTTCTGGGTACA
TCAGAAAGCTGATTGACATAATGAAGAGTAAGCAGAGAACAGTGCAGACACTTGGGATCTTTTG
AGAGTAAGAATTCAGAGTGGAGAAAGAGTCAATGTGAATCTGAATTTAAAGTGGATCCTGTGTG
AGTGTGGAACATTGCACGTTTCTTTTCTGATACAGATACTTAGCAAAGTTACTTGTACTCAAGT
ATTAAGCCGTAGCAACACATATGCTGTAACATTAAATTCACTAATGCTATCTGACAAAATAATC
ACCAGGACTTGAATAGCTAAGCAGTTTTGTCAATCTCTCTTTTGGGTGCTTCACTGTCTTTGGA
AACTTAAATGCTCAGGATATAACGGTGATGTGGCCATGTTATAGGTCATATTAACTTCCAAAAC
GTTTTATCTGACAGTATTAACCTTCAATTTCTCATAGGTTTCATCTATCAAATTTTGCTAGATT
TCAGAATAGGCACCTTGTTCTACACTTATACATCTTTTCAGAATGCCCACCTAGTAAATAGTTT
TTGCAAGAACAAACGACATGTTTAGAACAAAACACCATCCATACATCAATACCATGTTCACTTT
TGCATGCACTGATTAATACATAATTTGTTTGGCTTTCAGGGACTGGATTCTGATGAATAAACAT
GGTTGATGTCAATGAGCAGACGATTGGATCAGCTTGGACTGAACACGTACTATTTTCTGACTGC
AAGTCCAAGGAGAGTAACAAGTAATTACACTGTCACCCTGCATTCCTTCTACAAAATTATTAAA
ATGGAACTGTCAAAATTTACTTCATGGTTGCAACAATGGGCATATTTACTATGAAATAAAAACA
AAGACATGATTACGTGGGCTACAATAAAAACTGATGAATGCAATAGAGGAGATGCTGGTGAAGG
CCTGTTTTTTACAATGGGGTGGTGCTGGATGATTTTCCTCCAAAATTCTGTGCGAAATTATTAC
TCTCACTCTCAGTCAATTTTGATATGCCTACCCTACGCTTCATTTTTTTCTTGTTCTTCATGAT
TCACTCTAGAATTACCATCATCCAATGTCCTCTTCTTTTAGTTTTCTCTGCTGAAACATTGAGC
AAGTCAAAATGAAGAGGAAGGAGTGATTAAGAATAATAAGAATGGGAGGCATTGGGAAACACTC
AGCCAAATTTCCACCTAGAGATGGAACAAGCAGTTTCCTCCATGTTCCCATTCCCAGCATTCTT
AGACCCTCTTTTGTGGACTGTAAATGCTAGGACTATCTCCCATGATGGATTCTTTGTTTCTTTC
TTCTCAGAGAGGAAGAATTTCTGACAGCCTGTGGATTGTTTTTTAGATCATGACAGCCTGCGGA
ATGGATCAAAGAACACCTTAATGCATATTAGAAACATCAGCGGTTCAGCATATGACTTATAGTT
TG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021