Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0148700_circ_g.4 |
ID in PlantcircBase | osa_circ_008465 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 2250829-2251334 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0148700 |
Parent gene annotation |
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11 t0148700-01) |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os11t0148700-01:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.223803277 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2251058-2250841(+) 2251308-2250932(+) 2251180-2250831(-) |
Potential amino acid sequence |
MVKIGRAPLCKIRFETFPPLHQFTSFQLLSSSVTGADSDAIERFLPRLPPVPRFWYAAGRDAPA DALGDSTGQSSISFSQLVENATPRILLSNWRAS*(+) MLHHEYYFPTGEQVEMNSGLIQHMPSKQVAESALENWSLHDKTH*(+) MASESAPVTDDDNSWKEVNWWSGGNVSKRILQRGALPILTIRKAARQGGKKRMFSVSYHEGSNF PRRTRQLAWRACVGLSQSSSQLALQLESNIRGVAFSTSWLKLIDDWPVESPSASAGASRPAAYQ KRGTGGRRGRKRSMASESAPVTDDDNSWKEVNWWSGGNVSKRILQRGALPILTIRKAARQGGKK RMFSVSYHEGSNFPRRTRQLAWRACVGLSQSSSQLALQLESNIRGVAFSTSWLKLIDDWPVESP SASAGASRPAAYQKRGTGGRRGRKRSMASESAPVTDDDNSWKEVNWWSGGNVSKRILQRGALPI LTIRKAARQGGKKRMFSVSYHEGSNFPRRTRQLAWRACVGLSQSSSQLALQLESNIRGVAFSTS WLKLIDDWPVESPSASAGASRPAAYQKRGTGGRRGRKRSMASESAPVTDDDNSWKEVNWWSGGN VSKRILQRGALPILTIRKAARQGGKKRMFSVSYHEGSNFPRRTRQLAWRACVGLSQSSSQLALQ (-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |