Detail information of 3_circ_ag.4


General Information
CircRNA Name 3_circ_ag.4
ID in PlantcircBase ath_circ_026424
Alias NA
Organism Arabidpsis thaliana
Position chr3: 17530387-17535360  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 3_circ_ag.3 AT3G47580_circ_g.1
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGGTCTGGCTCGGCTTCTACTCAAATTCGACAAGGAGTCATTCCTTAACCAACTAAGCTCAG
CCGGAGTTAGAGGAACCATCGGCTATGCCGCACCAGagtatggagtgggaggacagccatctat
aaatggtgatgtatatagttttgggattctccttttagaaatgttcactggaaaaagaccaacc
aatgagct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTATGGAGTGGGAGGACAGCCATCTATAAATGGTGATGTATATAGTTTTGGGATTCTCCTTTT
AGAAATGTTCACTGGAAAAAGACCAACCAATGAGCTATTTGGAGGAAACTTTACCCTGAACAGC
TACACTAAGTCGGCATTGCCGGAAAGAATATTGGACATTGTAGACGAATCAATTCTTCACATTG
GTCTCAGAGTCGGTTTCCCTGTTGTTGAGTGCTTGACAATGGTTTTTGAGGTGGGCCTTAGGTG
TTGTGAAGAATCTCCGATGAACCGGTTGGCAACGAGTATAGTCGTCAAGGAGTTGATCTCAATC
AGAGAGAGGTTCTTTAAAGCCAGTAGAACGACTTGGCGTTGAAGTGTTTGGTTTTGTCTACAAA
CTTTGCAACCCAATAAAAAGGCTTATAATATCTTATTTCATAAATTGGGGTTTTGTCTAAGAAT
GCTTGTAGAATATTGCTAATGAAATGCTTGTGTTAATTAATAAAAATGTATGAATGTTGTGGTA
CCAATTTTATATGGAGACAACGTAGCTTTATAGTTGCAAATCCACATTGTTCCCAATTTTATTT
GGATTCTCTTTGTTTTGGTAATGTAAAGTTCTGAACATGGAGCAATAGATCGATGTTCAACGAT
AAGTAAGTAAGCCTTGTCGTCTTGGTAATTGCGTTTACTAAAAGTCCCACAAGTGGGATATGGA
GAAAATACATCTAATGCCGGTCAGATCATGAAATGAGATCGACGTCAACATTTCTAGCATAAAA
TTGACTTTTGTTGGCACAGTGATCACGACATTACGATACGTTTTAGCTTACAAAAAATCGTTAA
CCGGATTATAGGGTATGTTACCCATAACAAAACAAAATTGTGAGCAACTATTCGTAACACTGGT
GGATATTACAAGAATAATCTTCGTTTACTGTACTTTTAATTTTTCTCTTTGAAATTTTACTATT
TTGTTGCAACTAGATGTTAATTTAGGTATGCAAACCCTATTTAATTAATGGGTATGTGTAAGAG
AAATTGATCCATTTAATTTCATTAAGAAAAAAAGTTAAATGGGGTTAAATAGGTTAGCCCAACT
AAACATATTTATTAAATGTAGTTTTACAACTAAACATATGGGGTATCCAATTAAACCTATTTAT
TTTTCTTTTATATTATTTATTCTTATTGAAAATGGTAATATGTTTATACATTAAAATTAAATTA
ATAAATTATTCTATTTAACTTCACTTTTTGGTTTAAATATTTGTTTTTAAACTGCAAAGCTCCA
TTTTCCACTAAAACCGTAAACCAATGTTTTCCCGTCAAAATCGTAATACCACGTTTTCCCGTCA
AAACCACAAAAAGTGTTTTCCGCAAAAATTGAAAATCATGTTTTCCCGCCAAAACCGTAAACCG
ACGTTTTTCTACCAAAACCGTAAAACCACGTTTTCCCGCCAAAACCGTAAAACTACGTTTCCTA
CCAAAATCACCAAAAATGTTTTTCTGCAAAAATCACAAAAAGTGTTTTCAACCAAAACTGAAAA
TCATGTTTTCCCGCCAAAATCGTATGCCGACGTTTTTCCGCCATACCGTAAAACCACGTTTTCT
CCCCAAAATCACAAAAAATGTTTTCCTGCCAAAATTACAAAAAGTGTTTTCCGACAAAATTGAA
AATCGTATTTTCCCGCCAAAACCGTAAACCGATGTTTTCTCACCAAAAACTGTAAACCAATATT
TTCTCGCAAAAACCTTAAACCCGTATTTTCTAGCTAAATTTTTCTTTGCCAAAAGAATATTCAC
CCATAAAAATCTGTAAAATAATTATTGATTATATTATATAGATATAGATCTAAATGGGTTTAAA
TAGATTAATGATAATTTAAATAGAAAAGATAAATGAAATATAAAATTAAAAAGAGTTAAATGAT
TTAGAGTAAATAGGATAGATTTTAAATGGGATGGGTTAACCCCTATTAACATTTGCGACTAAAC
TATTTTGGCTTTGCAATAATAACAAATGAAACCTGTCGTCAGTTGGTGGATTTCTTAAACCCAA
GGTGCGTGAAAATAAATATACAAGTGACATAAGTTGTAAACAGTAATGACTAGTGTCATCTTTT
AACAAAGTTGATTTGTTGACTTAGACGGCAATAATACGTGTCGTATTCTGTGTGGTTGTGAGCC
AATTTATTATCACCACAATACGTAATGAAAGGATTTGCAATTGCTTCGTCCCCTTTTAAATCAG
TTTCCTGCAAAGTTGATAAGCACAAAAACATTCAAAATATAAAAATAAACTTTGAGAAGGATGA
AACTATTTCTTTTACTTTCTTTCAGTGCTCATTTGTTACTGGGAGCAGATGGGTTTACCGATGA
AACTGATAGGCAAGCATTGTTGGAGTTCAAGTCTCAAGTTTCTGAAGGCAAAAGAGATGTCTTA
TCCTCATGGAATAACTCATTCCCTCTATGCAACTGGAAGTGGGTTACATGTGGTCGTAAACACA
AGAGAGTTACTCATTTGAACCTCGGGGGATTACAGTTGGGCGGGATAGTATCACCATCTATCGG
TAATGTATCGTTTCTCATATCACTTGATCTGTCTGATAACGCTTTTGGGGGTATCATCCCTCGA
GAGGTGGGAAACTTGTTTAGACTTGAACACTTGTATATGGCCTTCAATTCTCTAGAGGGAGGGA
TTCCAGCCACTCTATCTAACTGCTCTAGATTGTTGAACCTTGATTTATATTCAAATCCTCTTAG
ACAAGGTGTTCCTTCTGAACTAGGGTCATTGACGAAACTCGTTATTTTAGATCTTGGTCGAAAC
AACCTGAAAGGCAAGCTCCCTAGATCTCTAGGAAACTTGACCTCTTTAAAATCGCTTGGCTTCA
CAGATAACAATATAGAAGGAGAAGTTCCAGATGAATTAGCTAGACTGAGTCAAATGGTGGGTCT
TGGGTTATCAATGAACAAATTCTTTGGCGTTTTTCCTCCCGCCATCTACAATTTGTCCGCACTT
GAGGACTTATTCCTCTTTGGTAGTGGCTTCTCGGGTAGCCTAAAGCCTGATTTTGGTAATCTGC
TACCAAACATTCGTGAGTTAAATCTGGGAGAAAATGATCTAGTGGGAGCCATTCCAACAACACT
TTCCAATATTTCAACTCTACAAAAGTTTGGAATCAACAAAAACATGATGACAGGAGGTATATAT
CCGAACTTTGGAAAAGTACCGAGTTTGCAATACCTAGATCTTAGTGAGAATCCTCTAGGAAGTT
ACACTTTTGGAGATCTTGAATTTATTGATTCTTTGACTAATTGCACCCATTTGCAACTCTTAAG
TGTTGGTTACACTAGGCTTGGGGGTGCCTTGCCTACATCCATTGCCAATATGTCCACAGAACTC
ATCAGTTTAAACCTTATAGGAAACCACTTTTTTGGAAGCATTCCTCAAGATATTGGGAATCTCA
TAGGCCTACAAAGACTTCAGTTGGGAAAAAATATGTTGACCGGACCACTCCCAACTTCTTTGGG
AAAGCTTCTAAGATTGGGGTTATTAAGTCTATATTCAAATAGGATGTCAGGAGAGATTCCATCT
TTTATAGGCAACCTAACTCAATTAGAAATACTATATTTGTCCAACAATAGTTTTGAGGGAATTG
TTCCTCCGAGTCTCGGGAAGTGTAGTCACATGCTTGATTTACGCATTGGGTATAACAAGTTGAA
TGGGACTATACCGAAGGAAATTATGCAAATCCCAACCCTTGTTAACCTAAGCATGGAAGGTAAC
TCTTTGAGCGGCTCTCTACCAAATGATATTGGAAGTCTACAAAATCTTGTAAAACTATCACTTG
AGAACAATAAGTTTTCAGGACATCTCCCACAAACCTTGGGAAATTGTCTCGCGATGGAACAACT
TTTTCTACAAGGAAATTCTTTTGATGGAGCAATTCCAAATATAAGAGGGTTGATGGGTGTAAGA
AGAGTTGATTTGTCAAACAATGATCTATCGGGAAGTATACCTGAATATTTTGCAAACTTCTCCA
AGTTGGAATATCTCAATCTATCTATTAACAATTTTACGGGAAAGGTGCCTTCCAAAGGAAATTT
TCAGAACTCTACAATAGTTTTTGTATTTGGAAACAAAAACCTATGTGGAGGCATCAAGGATCTG
AAACTAAAGCCATGCCTCGCCCAAGAACCACCAGTGGAGACAAAGCATTCCTCTCATTTAAAGA
AAGTTGCAATTTTAGTAAGCATAGGCATAGCTTTGCTATTGCTGTTGGTCATAGCTTCGATGGT
TCTGTGTTGGTTCAGAAAAAGAAGGAAGAACCAGCAGACAAATAACCTGGTTCCTTCTAAGTTG
GAGATTTTCCATGAGAAGATAAGCTATGGAGATCTACGAAATGCGACAAATGGCTTCTCTTCAA
GCAATATGGTTGGGTCAGGTAGTTTTGGTACTGTGTTCAAGGCATTGCTCCCGACGGAGAGCAA
GATTGTTGCAGTGAAAGTTCTAAACATGCAGAGACGTGGAGCTATGAAGAGCTTTATGGCAGAA
TGTGAATCCTTGAAAGACACAAGGCATCGTAATCTTGTGAAATTACTGACAGCTTGCGCTAGTA
CTGATTTCCAAGGAAACGAATTCAGAGCGCTTATCTATGAGTACTTGCCGAATGGAAGCGTGGA
TATGTGGCTGCACCCAGAGGAAGTCGAAGAGATACGTAGGCCCCCACGAACCTTGACACTTCTT
GAAAGGCTTAATATTGTCATAGACGTGGCTTCTGTTTTGGACTATCTTCATGTTCACTGTCATG
AGCCTATAGCTCATTGCGATCTCAAGCCAAGCAACGTCCTTCTAGAAGATGATTTGACCGCCCA
TGTTAGTGATTTTGGTCTGGCTCGGCTTCTACTCAAATTCGACAAGGAGTCATTCCTTAACCAA
CTAAGCTCAGCCGGAGTTAGAGGAACCATCGGCTATGCCGCACCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.604447721
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017