Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d020046_circ_g.2 |
ID in PlantcircBase | zma_circ_002522 |
Alias | circ1590 |
Organism | Zea mays |
Position | chr7: 88539430-88544453 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d020046 |
Parent gene annotation |
Protein SAWADEE HOMEODOMAIN HOMOLOG 2 |
Parent gene strand | - |
Alternative splicing | Zm00001d020046_circ_g.1 Zm00001d020046_circ_g.3 Zm00001d020046_circ_g.4 Zm00001d020046_circ_g.5 |
Support reads | 22 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-TA |
Number of exons covered | Zm00001d020046_T010:4 Zm00001d020046_T009:4 Zm00001d020046_T005:4 Zm00001d020046_T007:4 Zm00001d020046_T002:4 Zm00001d020046_T013:1 Zm00001d020046_T003:3 Zm00001d020046_T011:3 Zm00001d020046_T001:1 Zm00001d020046_T004:4 Zm00001d020046_T006:4 Zm00001d020046_T008:4 Zm00001d020046_T012:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.021397276 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |