Detail information of AT2G06025_circ_g.3


General Information
CircRNA Name AT2G06025_circ_g.3
ID in PlantcircBase ath_circ_012957
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2351395-2351845  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method circRNA_finder, find_circ
Parent gene AT2G06025
Parent gene annotation Acyl-CoA N-acyltransferases (NAT) superfamily protein
Parent gene strand +
Alternative splicing AT2G06025_circ_g.2
Support reads 2
Tissues whole_plant
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered AT2G06025.6:3
AT2G06025.1:3
AT2G06025.7:3
AT2G06025.4:3
AT2G06025.3:1
AT2G06025.2:2
AT2G06025.5:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGTAATTAAGGAAGGCTCAAATTCCTTACTCTAAAAGTTGCTAATTGATTTTCATGACCTGA
CACATATACTGTGATTGGACCAGATTGTTGAAACAGgaaaaggtgaagtctcaattgttctgca
gcataaaccaggaaggatcaaataggtatggttatattgctaatctatgtgttgcgaaatcagc
acgccgcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAAAGGTGAAGTCTCAATTGTTCTGCAGCATAAACCAGGAAGGATCAAATAGGTATGGTTATA
TTGCTAATCTATGTGTTGCGAAATCAGCACGCCGCCAGGGTATTGCTTGCAACATGTTACGTTT
CGCTGTCGAATCAGCCAGACTGAGTGGTAAATAATGTTAAACGGATAAAGAAAATGGCCGTCAT
TGTAATGATTGTATCTAAGCTGTTAAATAAGTCCCAACATATGTAGAGAATGATCTAAACCTTA
TGTGGATTGTATTGGTTGCAGGAGTTGAACAAGTATATGTTCATGTACATAAAAACAATTCAGT
TGCTCAGGAATTATACCAGAAGACCGGTTTTAAGGTAATTAAGGAAGGCTCAAATTCCTTACTC
TAAAAGTTGCTAATTGATTTTCATGACCTGACACATATACTGTGATTGGACCAGATTGTTGAAA
CAG
Conservation Information
Conserved circRNAs NA
PMCS 0.173655581
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017