Detail information of AT1G03993_circ_g.1


General Information
CircRNA Name AT1G03993_circ_g.1
ID in PlantcircBase ath_circ_000002
Alias NA
Organism Arabidpsis thaliana
Position chr1: 23940-24076  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene AT1G01040
Parent gene annotation Dicer-like 1
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues seed
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT1G01040.1:1
AT1G01040.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGAGGCGGGTAACAATAAGAAGAAAAGGGAATGTAACAATTACAGAAGAGATGGTAGAGATAG
AGAAgtagagggcatgttaataattctagggagggagataggtttatgaataggaaacgtactc
gtaattggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAGAGGGCATGTTAATAATTCTAGGGAGGGAGATAGGTTTATGAATAGGAAACGTACTCGTAA
TTGGGACGAGGCGGGTAACAATAAGAAGAAAAGGGAATGTAACAATTACAGAAGAGATGGTAGA
GATAGAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.172141121
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017