Plant Circular RNA Database

Detail information of Os05g0350700_circ_g.10

			
						 General Information
					
						CircRNA Name
						Os05g0350700_circ_g.10
					
						ID in PlantcircBase
						osa_circ_027515
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 16573876-16576817  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, circseq_cup
					
						Parent gene
						
							Os05g0350700						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os05t0350700-01);Hypothetical c
onserved gene. (Os05t0350700-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0350700_circ_g.1 Os05g0350700_circ_g.2 Os05g0350700_circ_g.3 Os05g0350700_circ_g.4 Os05g0350700_circ_g.5 Os05g0350700_circ_g.6 Os05g0350700_circ_g.7 Os05g0350700_circ_g.8 Os05g0350700_circ_g.9 Os05g0350700_circ_g.11 						
					
						Support reads
						3/3
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0350700-01:3
Os05t0350700-02:3

General Information
CircRNA Name	Os05g0350700_circ_g.10
ID in PlantcircBase	osa_circ_027515
Alias	NA
Organism	Oryza sativa
Position	chr5: 16573876-16576817 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, circseq_cup
Parent gene	Os05g0350700
Parent gene annotation	Conserved hypothetical protein. (Os05t0350700-01);Hypothetical c onserved gene. (Os05t0350700-02)
Parent gene strand	+
Alternative splicing	Os05g0350700_circ_g.1 Os05g0350700_circ_g.2 Os05g0350700_circ_g.3 Os05g0350700_circ_g.4 Os05g0350700_circ_g.5 Os05g0350700_circ_g.6 Os05g0350700_circ_g.7 Os05g0350700_circ_g.8 Os05g0350700_circ_g.9 Os05g0350700_circ_g.11
Support reads	3/3
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0350700-01:3 Os05t0350700-02:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TATGAGGAGTCAGGAGCTTGCTGCTTTGATGAGACCCCTTTCAAGGATATGTTTGTATCAGCAA
CTTCTCACAGAAGCGACCCAGATTCTGCTTCACAAGgttgtagataagaaaaacttgctacgga
agctggatggcattcttagaactaaaaaggagtcacagcacaggtatttcacatcattgttttg
ttgggaaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 325
Transcript exons: 16573876-16576817
GTTGTAGATAAGAAAAACTTGCTACGGAAGCTGGATGGCATTCTTAGAACTAAAAAGGAGTCAC
AGCACAGGGAATTTTCACGGCGTGCCATGGAAAGGCTTTTGCTGATAGCGTATGAGAAATACAT
GGCCTTCTGTGGTTCTTCAAGTAGCAAAAATGTAAATAGAGCTGTCAAACATGCTGCTCTAAGT
TTTGTTAAACGAACAATAGCACGTTGCCAGAACTATGAGGAGTCAGGAGCTTGCTGCTTTGATG
AGACCCCTTTCAAGGATATGTTTGTATCAGCAACTTCTCACAGAAGCGACCCAGATTCTGCTTC
ACAAG
						
					

						Genomic sequence
						
							GTTGTAGATAAGAAAAACTTGCTACGGAAGCTGGATGGCATTCTTAGAACTAAAAAGGAGTCAC
AGCACAGGTATTTCACATCATTGTTTTGTTGGGAAACTATTTCTTGAGATTCAAGCCCTTACAT
CTATGTGGTTACCCTGTAACCAGGGAATTTTCACGGCGTGCCATGGAAAGGCTTTTGCTGATAG
CGTATGAGAAATACATGGTAAGTCTTCTGGGCGAGAAATACATGCTGATTGATGTTTCTTGTTT
TATTTGTTGGGTTGGGTCAATAGCTAAGGTGCAGTGTCTACTATGTAGTTTTCCTAGTTGCCAA
CACAGCCTTAACAATCTAACTCTGATTAAGCCTGCTAATGTTCGCTATTTGAGGCTTCATGTCT
ATATTGTGAATTTTCTTTTTTTTTATTAGTAATGATTTCTATTTATCCGTCGAATGTATAATGT
CGAGTTTTAAAACTCCTGTTTCTATCTTTCATCGTCTTTCGATATAAATTGCAAATTGTTCAGT
GTCAAATACATAGGTAAATAATCGAATTTAGTTGTATGAGCAATTATGTATTACTCCCTCCGTC
CTAGAGTAAGTTCATTTTTGGTCCCTCCCATTTGTCCCAAAATAAGCTCGGTTGTGAACAATCA
TTGCATTGTGAAAGTAGTGTATAAATGCATTGGGACTATATAAAGAGAGTAATAATTGCATTAG
GATTTGATAAAGTGGGGTGTTTTCTAGTCTTTTTAGTTTTGTATTGGTATGTGTGGGATGGTTG
AAAAATGAACTTATTTTGGGACGGAGGGCCATTCTAAGAGTTATTAATCCGTGGGACAAAAATT
TCCGTGCTGTGGCTCCGTCACAATAGTATTGCATTCTGTATTTTCACTGACAATTTAGCACATG
CATATAACTTGTATGACTCCCATCCTCCAATTCATGCCTGGCAAGTGGGAAGTGCTTGCATCAA
ATACTATTAGACACTTGTACACTGCTTAGAGTTAGCCTTATGCCTAGTTTGAATCTGCAACTTG
GTTTAGCTTTTCGGTGACACGTAAAACGAGGTAATCCATTACCGCTTGATTAATTGAGTATCAA
CTATAACAAACTTAAAAATTGGGTTTATTGATTTCTGAAAGAAACTTCTATATATTCCTTTTTT
TATTTTTCAAAAAGCGCACCGTTTAGTAGTTTCGAAAGCGTGCTAACCGAAAACGTGGAAGTTG
CAGTTTAGAGTTGAAGAAGAGAACGCAGCCTTAGGGTGCATTTGGGAGGAGTTTGGAACTTCTC
CCCGCACGGAAAATGAGGTGGCTCATTAGTGCATGATTAATTAAGTACTAGCTAAAAAAATCTT
GAAAAATGGATTAATGTGATTTTTTAATACAACTTCCCTATAGAATTTGTTTTGCAAAAAACTG
CACTGTTTAGCAGTTTGGGAAGCGTATGCGCGAAAAAGGAGGAAGTAGAAGTTGGGAAAGGGGA
GAAAAGAACACACCCTTAGCCTGCCTCTAACCTCATCTGAAAAGGTGCAACTCAAATTACTCTC
CAGGGGTTATGAATTGAGCTACCGCATGTATTGACATGACCTCATCTAATACGTTTCATATTTG
GTAGTTCAACTCTAATCTCATCTTGAAATCATGAAGCATGTCATATGTGGTAGTTCCACTCATA
ACCTCATCTTGAAAAGTAGAAATCATAAAGGTCAAGGGAGGTGACATGACAGGAGCCATCAGCC
ACTACCATGCCCTCCTTGCATGACATGTATTAGGTCTAAGGGGCATTAGGGCATGTCCATCAGT
TGAACTGAGCACAATCACCAGGGCTGTGTTCGCCATGAGGAGATTGAGAAGAAAACTCCAACGT
TTGCCCCGCGCATGCTTTCCGAACTGTTAATCGGTGTATTTTTTGCCAAAAAAAAAAATCTATA
GGAAAGTTGCTTTAAAAAATCATATTTAATCCCTTTTCAAGTTTAAAATAATTAATACTCAAAT
AATTATTTGCTAATGACTCCTCTCGTCTTCCATGTCATCAAGAGCCCCTGCCATCTAAAATAAT
TCATACAACAGTTGGGTCTCTACCAATTAATACTTATTATATTTTATTCATTTTAATGGGCCTC
AATCTTATCATCAGCATCATGGATACACCTATTTTCTCCTCGAAGTGGGTTCCTCCCTCGTGTA
TTGTGCCTCGCATCGATGTTTGCAGAGAGACAGTCCCTCCTGTCTCTTCCCCCTTTCTATTCCA
TGTCATCGAAATTGCCAAGCTGGCAGTTTTATTGGCCAGCTATTAATTGCTGTTGTTAACCAGA
CATTGGGGCGATGGTGACATTTTTAGAAGTATTCTAACAGTTGGATGTTGAAAATAAAATTTGA
GACGGTGCAAAAATTAGTAGCATATGTAGAAGTGGACACTCACTAGTGGCAACAGCTGAAATTT
CCCATTATAATGTTGTTGCAGTTATGGTGACTTTGCAGTAGCTTTTTAACCTAATTGGAGTCCC
TTCTCTGTTTTTTTTTTTTTTTTTTGAGATGAAACTTGACTCCCTCTACGTGGTAAATCATTTC
ATATTTTGAATTTATCACACTGACCAGTGCTTTAAGTTCATGTAGTCTTGCATTGTCTGGCAAC
TATGTTTCTGTTGGCCAATTGATATGTTACTCTGTTGATGACCTTGTTTGCTTTGTGGACTTTA
AGTTCACTATTTTTTGATACTTATTAAATAATTGATTGTTGTTACTGTGAAACTACAGGCCTTC
TGTGGTTCTTCAAGTAGCAAAAATGTAAATAGAGCTGGCAAACATGCTGCTCTAAGTTTTGTTA
AACGAACAATAGCACGTTGCCAGAACTATGAGGAGTCAGGAGCTTGCTGCTTTGATGAGACCCC
TTTCAAGGATATGTTTGTATCAGCAACTTCTCACAGAAGCGACCCAGATTCTGCTTCACAAG
						
					

			
		

Sequences
Splice junction sequence	TATGAGGAGTCAGGAGCTTGCTGCTTTGATGAGACCCCTTTCAAGGATATGTTTGTATCAGCAA CTTCTCACAGAAGCGACCCAGATTCTGCTTCACAAGgttgtagataagaaaaacttgctacgga agctggatggcattcttagaactaaaaaggagtcacagcacaggtatttcacatcattgttttg ttgggaaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 325 Transcript exons: 16573876-16576817 GTTGTAGATAAGAAAAACTTGCTACGGAAGCTGGATGGCATTCTTAGAACTAAAAAGGAGTCAC AGCACAGGGAATTTTCACGGCGTGCCATGGAAAGGCTTTTGCTGATAGCGTATGAGAAATACAT GGCCTTCTGTGGTTCTTCAAGTAGCAAAAATGTAAATAGAGCTGTCAAACATGCTGCTCTAAGT TTTGTTAAACGAACAATAGCACGTTGCCAGAACTATGAGGAGTCAGGAGCTTGCTGCTTTGATG AGACCCCTTTCAAGGATATGTTTGTATCAGCAACTTCTCACAGAAGCGACCCAGATTCTGCTTC ACAAG
Genomic sequence	GTTGTAGATAAGAAAAACTTGCTACGGAAGCTGGATGGCATTCTTAGAACTAAAAAGGAGTCAC AGCACAGGTATTTCACATCATTGTTTTGTTGGGAAACTATTTCTTGAGATTCAAGCCCTTACAT CTATGTGGTTACCCTGTAACCAGGGAATTTTCACGGCGTGCCATGGAAAGGCTTTTGCTGATAG CGTATGAGAAATACATGGTAAGTCTTCTGGGCGAGAAATACATGCTGATTGATGTTTCTTGTTT TATTTGTTGGGTTGGGTCAATAGCTAAGGTGCAGTGTCTACTATGTAGTTTTCCTAGTTGCCAA CACAGCCTTAACAATCTAACTCTGATTAAGCCTGCTAATGTTCGCTATTTGAGGCTTCATGTCT ATATTGTGAATTTTCTTTTTTTTTATTAGTAATGATTTCTATTTATCCGTCGAATGTATAATGT CGAGTTTTAAAACTCCTGTTTCTATCTTTCATCGTCTTTCGATATAAATTGCAAATTGTTCAGT GTCAAATACATAGGTAAATAATCGAATTTAGTTGTATGAGCAATTATGTATTACTCCCTCCGTC CTAGAGTAAGTTCATTTTTGGTCCCTCCCATTTGTCCCAAAATAAGCTCGGTTGTGAACAATCA TTGCATTGTGAAAGTAGTGTATAAATGCATTGGGACTATATAAAGAGAGTAATAATTGCATTAG GATTTGATAAAGTGGGGTGTTTTCTAGTCTTTTTAGTTTTGTATTGGTATGTGTGGGATGGTTG AAAAATGAACTTATTTTGGGACGGAGGGCCATTCTAAGAGTTATTAATCCGTGGGACAAAAATT TCCGTGCTGTGGCTCCGTCACAATAGTATTGCATTCTGTATTTTCACTGACAATTTAGCACATG CATATAACTTGTATGACTCCCATCCTCCAATTCATGCCTGGCAAGTGGGAAGTGCTTGCATCAA ATACTATTAGACACTTGTACACTGCTTAGAGTTAGCCTTATGCCTAGTTTGAATCTGCAACTTG GTTTAGCTTTTCGGTGACACGTAAAACGAGGTAATCCATTACCGCTTGATTAATTGAGTATCAA CTATAACAAACTTAAAAATTGGGTTTATTGATTTCTGAAAGAAACTTCTATATATTCCTTTTTT TATTTTTCAAAAAGCGCACCGTTTAGTAGTTTCGAAAGCGTGCTAACCGAAAACGTGGAAGTTG CAGTTTAGAGTTGAAGAAGAGAACGCAGCCTTAGGGTGCATTTGGGAGGAGTTTGGAACTTCTC CCCGCACGGAAAATGAGGTGGCTCATTAGTGCATGATTAATTAAGTACTAGCTAAAAAAATCTT GAAAAATGGATTAATGTGATTTTTTAATACAACTTCCCTATAGAATTTGTTTTGCAAAAAACTG CACTGTTTAGCAGTTTGGGAAGCGTATGCGCGAAAAAGGAGGAAGTAGAAGTTGGGAAAGGGGA GAAAAGAACACACCCTTAGCCTGCCTCTAACCTCATCTGAAAAGGTGCAACTCAAATTACTCTC CAGGGGTTATGAATTGAGCTACCGCATGTATTGACATGACCTCATCTAATACGTTTCATATTTG GTAGTTCAACTCTAATCTCATCTTGAAATCATGAAGCATGTCATATGTGGTAGTTCCACTCATA ACCTCATCTTGAAAAGTAGAAATCATAAAGGTCAAGGGAGGTGACATGACAGGAGCCATCAGCC ACTACCATGCCCTCCTTGCATGACATGTATTAGGTCTAAGGGGCATTAGGGCATGTCCATCAGT TGAACTGAGCACAATCACCAGGGCTGTGTTCGCCATGAGGAGATTGAGAAGAAAACTCCAACGT TTGCCCCGCGCATGCTTTCCGAACTGTTAATCGGTGTATTTTTTGCCAAAAAAAAAAATCTATA GGAAAGTTGCTTTAAAAAATCATATTTAATCCCTTTTCAAGTTTAAAATAATTAATACTCAAAT AATTATTTGCTAATGACTCCTCTCGTCTTCCATGTCATCAAGAGCCCCTGCCATCTAAAATAAT TCATACAACAGTTGGGTCTCTACCAATTAATACTTATTATATTTTATTCATTTTAATGGGCCTC AATCTTATCATCAGCATCATGGATACACCTATTTTCTCCTCGAAGTGGGTTCCTCCCTCGTGTA TTGTGCCTCGCATCGATGTTTGCAGAGAGACAGTCCCTCCTGTCTCTTCCCCCTTTCTATTCCA TGTCATCGAAATTGCCAAGCTGGCAGTTTTATTGGCCAGCTATTAATTGCTGTTGTTAACCAGA CATTGGGGCGATGGTGACATTTTTAGAAGTATTCTAACAGTTGGATGTTGAAAATAAAATTTGA GACGGTGCAAAAATTAGTAGCATATGTAGAAGTGGACACTCACTAGTGGCAACAGCTGAAATTT CCCATTATAATGTTGTTGCAGTTATGGTGACTTTGCAGTAGCTTTTTAACCTAATTGGAGTCCC TTCTCTGTTTTTTTTTTTTTTTTTTGAGATGAAACTTGACTCCCTCTACGTGGTAAATCATTTC ATATTTTGAATTTATCACACTGACCAGTGCTTTAAGTTCATGTAGTCTTGCATTGTCTGGCAAC TATGTTTCTGTTGGCCAATTGATATGTTACTCTGTTGATGACCTTGTTTGCTTTGTGGACTTTA AGTTCACTATTTTTTGATACTTATTAAATAATTGATTGTTGTTACTGTGAAACTACAGGCCTTC TGTGGTTCTTCAAGTAGCAAAAATGTAAATAGAGCTGGCAAACATGCTGCTCTAAGTTTTGTTA AACGAACAATAGCACGTTGCCAGAACTATGAGGAGTCAGGAGCTTGCTGCTTTGATGAGACCCC TTTCAAGGATATGTTTGTATCAGCAACTTCTCACAGAAGCGACCCAGATTCTGCTTCACAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_015353 						
					
						PMCS
						0.105967389

Conservation Information
Conserved circRNAs	osi_circ_015353
PMCS	0.105967389

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							16574047-16573883(+)
16576720-16573883(+)
16574085-16576813(-)
						
						Potential amino acid sequence
						
							MERLLLIAYEKYMAFCGSSSSKNVNRAGKHAALSFVKRTIARCQNYEESGACCFDETPFKDMFV
SATSHRSDPDSASQGCR*(+)
MRSQELAALMRPLSRICLYQQLLTEATQILLHKVVDKKNLLRKLDGILRTKKESQHREFSRRAM
ERLLLIAYEKYMAFCGSSSSKNVNRAGKHAALSFVKRTIARCQNYEESGACCFDETPFKDMFVS
ATSHRSDPDSASQGCR*(+)
MYFSYAISKSLSMARRENSLCCDSFLVLRMPSSFRSKFFLSTTL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	16574047-16573883(+) 16576720-16573883(+) 16574085-16576813(-)
Potential amino acid sequence	MERLLLIAYEKYMAFCGSSSSKNVNRAGKHAALSFVKRTIARCQNYEESGACCFDETPFKDMFV SATSHRSDPDSASQGCR(+) MRSQELAALMRPLSRICLYQQLLTEATQILLHKVVDKKNLLRKLDGILRTKKESQHREFSRRAM ERLLLIAYEKYMAFCGSSSSKNVNRAGKHAALSFVKRTIARCQNYEESGACCFDETPFKDMFVS ATSHRSDPDSASQGCR(+) MYFSYAISKSLSMARRENSLCCDSFLVLRMPSSFRSKFFLSTTL*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2016;Chu et al., 2017

circRNA

Detail information of Os05g0350700_circ_g.10

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