Detail information of AT2G25650_circ_g.2


General Information
CircRNA Name AT2G25650_circ_g.2
ID in PlantcircBase ath_circ_014792
Alias At_ciR2118, Ath_circ_FC5457
Organism Arabidpsis thaliana
Position chr2: 10914740-10915001  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ, CIRI-full
Parent gene AT2G25650
Parent gene annotation GLABROUS1 enhancer-binding protein-like 1
Parent gene strand +
Alternative splicing AT2G25650_circ_g.1
Support reads 4
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered AT2G25650.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAGACTATGAAGAAGAAAAAGAAGAAGAAGAAGAAGAATTTGGGTCCGCCGTTGATCGTCCGG
ATCTGGAACGAGGAAGATGAGCTCTCTATCTTAAAGaatcagcaagtgtaaagcaattaccatg
gtgactccgaagcagatcgatttctcttcctgtggtggtggtgataactccgacgataccctct
cccatcga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 262
Transcript exons: 10914740-10915001
AATCAGCAAGTGTAAAGCAATTACCATGGTGACTCCGAAGCAGATCGATTTCTCTTCCTGTGGT
GGTGGTGATAACTCCGACGATACCCTCTCCCATCGAGAATCTCCACGGAATCCTTCCTCAAAGC
GTGCTGCTGCTTCCTTCGCAGCAGAAGCAGGCGAAGAGACTATGAAGAAGAAAAAGAAGAAGAA
GAAGAAGAATTTGGGTCCGCCGTTGATCGTCCGGATCTGGAACGAGGAAGATGAGCTCTCTATC
TTAAAG

Genomic sequence AATCAGCAAGTGTAAAGCAATTACCATGGTGACTCCGAAGCAGATCGATTTCTCTTCCTGTGGT
GGTGGTGATAACTCCGACGATACCCTCTCCCATCGAGAATCTCCACGGAATCCTTCCTCAAAGC
GTGCTGCTGCTTCCTTCGCAGCAGAAGCAGGCGAAGAGACTATGAAGAAGAAAAAGAAGAAGAA
GAAGAAGAATTTGGGTCCGCCGTTGATCGTCCGGATCTGGAACGAGGAAGATGAGCTCTCTATC
TTAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.305688677
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5021
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chen et al., 2017a