Detail information of Os03g0651100_circ_g.1


General Information
CircRNA Name Os03g0651100_circ_g.1
ID in PlantcircBase osa_circ_020832
Alias NA
Organism Oryza sativa
Position chr3: 25280372-25284959  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os03g0651100
Parent gene annotation Peptidase S54, rhomboid domain containing protein. (Os03t0651100
-01)
Parent gene strand -
Alternative splicing Os03g0651100_circ_g.2
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0651100-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCTTTCCAACTCAGTGCCCAAGGGTACCAAGGCCAGCATGTTGAATAGCACATGAAGCAAAG
AACCATGAAATACAACAGATGTATAGAACCTGTACActtttcaaagcccattccaaccagcttc
ttaagttcttcatcaaatgtatcaacctgcaaaagatagtcaattatcatgattaaatcaatat
caacatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTCAAAGCCCATTCCAACCAGCTTCTTAAGTTCTTCATCAAATGTATCAACCTGCAAAAGA
TAGTCAATTATCATGATTAAATCAATATCAACATCCAATACTAAATCATTAAAAGGTACATAAC
ACAGAACCTGGTCAGCTGCTACAGTTGCATCAGCTCTGACTGTGTTTGCTGCTGGATGCCTATT
GTAATGGAAAACCAGAAGTAAGAACTACAAAACAACTAGGTTTATTCTCGTATTAGAAGTGTCA
CAGTTCTTAAATCTTAAGGATGGTTTTGCTTGATATTTCTCATATATCACTATCAGAAAGTTCA
CATAAGCCAGTGACTGGCTTCTCAGGGGCATCTTACATAAAACATGAGACATTGTTTATGAAGT
GCAAGTAGATGATATCATGGTAAGGATTAAGTCATAAATCTCATAACAGTATATAGGGTGACTT
CTGATTATAAATATCCTTTAACTCTGTGGAAGTAAACCATTACCTGAGTTAATAGCTATCTCAA
ATGTCAGAGAAGAAATTGAAATTACAGCAGTACTAAAAAGGATGCCAACTCCATTAGCGTCATT
GCATCGATTCTTTTCTTTTTTGGGATGGGTCATTTTATTGAATTAGTATAAGCATTAAATATTT
AATCATTTTAGAAGGCATAAATCACTAACTGGATAAAACTGACAATATTAGTTGTAGCTATCAA
ATGAGATGAACGCTTATAGGCACTAGGACAACATATATAATTGCTGAACAACAACAAAAAACCT
ATCCTGTGAAAGCTAGAATAACCAGCAGGAACCAGCTGGTTCCCACCAGATTACCCAATTCTAG
CCAAAAAAAATCAAGTGTCGATTTTTTTTTTTACCTGACAAGCCTTGTTTTATGAAGTGTCTCA
GTACTTCTCTTTTTTATTTTGCATTATTTGAGAAATACTTGATATGTTCTTTGATCATAACATT
GGCAGAAAATTCAAACAAAGCATTTTAATTATTCAATCCTGCACCAGGAATTCTGCAATTCCAG
AAAGCTCCCTAATCCTGTAAGTGACTATTTGCATCAAAATAAGTTTTTTTTTTATCCCAAGAAG
GCTGTGTTAGATGACTCATGTTTGTGGGCAAGAAGTCAAAGTTTATGCGCTTCTCTTGATATGC
TCGAAATTAACTCAACTCAAAAGGAAAGTGTGCATATCCCAAGTCTGCCTTGAGTTCAAAATCA
AAGCCAATATATTCTAAAAGATTATAACCAGAAATGAATACCAACTGTTCCTATTATGAGCCCT
AACAACAATCCTGAATTGAGGGTACCAATTGGCACGATCTGGGGTCTTGGAAATCATTTGCATG
CAAATTTGAGTCATCATAAGCTTATTTTTTTGGTATCTCCACCTTTTATATCATACTCTTCTTT
GGATACTGCAAGTTTGCGGCGAGATTTATGGAGTTTGATTTTAAGTACACTATTTCAAGAATTA
CAATTTCGTATAGCAAGATTAGCCTATTAATGATAAATCAACCATGAATGCATCTGAACCAAGC
TCAATTTGGGTAGCTTCCATTGAGCAGAACTTGAGGTGGTGCACTAGCCAAGCAAGGATCACTT
GAGCACTGCTCAGTTCTCACCTGTGTAGTGCGGAATTTCAAAACTTTGAGCTTACCTTTGCAAA
ACATATCATTTTACTAACTAATTGAACAGGGACTTATTACTGGGACGAATAGTGCTAATTGCAT
AATGCAAACATTCAAACTGACTAAAGAAACAGAACTTGGTAAATGCTAATTAGAGCTAACAAAA
TGTTTAGTCTGATATAGAAAAAGAACACAACAGAAGGTGCTCCAACAAAATGCTATGGAGTACC
AATGACCAAACCAATTATTTATTTAAACTATTAAGTACTGTTTTAGAAAAGATCGTTTTGTATA
TTCAAGTTATTCAGGCTTCATATGAGCTTCTGGTTCCAATGCATAGGTGATATTCACCAGATGT
CTACCGTATTAAAGAAATGCCAAGTAGAAAATGCATTACTGTGAACTCGTAAGCGGATCACTTG
GAGTTGTGCTATCCAACAAGCTAGCATGCAAATTTGCACTTGCCTCCCTTGCAGTTGGTTCAGT
TCCAGCAGAACTAAGTGTCCGTGCTCTCCCTGGAAACCTGGGATCTTGTTCCTATAAGAGAATA
TTCAGTATGGTGTTCATCTCAACACATATTTCTGGGATATAATGTTCAGATCCATGCAAAGTAT
TGAGCAAATGAAAACAAACAATCCAGTGAGCTTAGGCACATATATTTTCTTGGAAGAGCATCAC
CCCAGTGTGCACAAACAAAACAAAAGAGAACTGCTATAAACTTGAATTGAACTATCATAAAGGG
GATAAAGTCAACTACCCGAAAAACCAGGATAGAGGTTTCAAAAAACATAATTGATCGAGAACCA
AAATGCAGTCTATGAAAGTAGGAACAGAGCTACTAGTATACAACTATAACCTTTGAAATCATCT
TTTAAGAATCCATGTACTAACAACTGTAACTAGTGTTTCTATCAAAAAGGAATACACATCTGAA
TCATGTTGTACAAAATTCACAACAAAATCAATTACTGCTACATTTTTTGTCCTCTGCCCATGTC
ATCAGTACATCAACAGAAAATTTATACTTGCAAAGATGAGTACAGTAAAACAATAAAAGGCATC
CATGATTTCTTTATATTCACCTGAGTATTCCCCTGAGTGGTGGTTGTCTGCCTGCTTGGTATCC
ATGAAGAAATATTTCTTAAGAAATTTGCATTAATCAGAGCGCTGCAAATCAAGGATTTAATACA
TTAGTCCTATGAATAAATTGAAATCAATATCAATATGGAAATAATATCTAAAATACCTTGGTGC
AGTAGATGTGTTAGAAAATGTAGGAAGCTGGCCATATGTAGTCCCTCCAGTACACAGAATGAAG
CCAGGACGCCTTACACAAACAGACTGATATCCAATATCTCAAGAGAATAAGCATCATAGAAGAA
GCATCTCCCTAAGTTACATGAACAATGACATAACAAGACAACTTAAATCATTGTTCAAAACTTA
CTAGCACTGACAAGCCCTCAATAGAAGAATAAAATGATGGTCCAGGAAGCAAGTAGTTGAACAG
CCCATAAGTATCTGATGGAAATAACAATAATGATTAGCAAGGAATATGATAATAACTAATGCAG
TTCATTAAGGCTTCATAAATAATGGGTAAAAGGGACAAACATGCAAACCCTGACAAGATGCCAC
ACAGGTGGCCCAGCAACGAAACATTGCTTGCCAGAAACTGAAAGAGAACCAGCAAAATCCACGC
ATACCTGATATTGTGCACATTTGAAACATTTCTTTGTAAGACTATCCAATAAATAAGAAATTGA
GAACAAAAATAGATGCATAGAGCGATTACCAATTTGCAGGAACATTGAAGAGGCCAAAGACACT
GTGAATAAGACATCAAGGAAAAATGTCATTGTATAAAAATAGAAAGAACTAATAACTTTCAGTA
AGTTGAAAAAACAATAAAGACCATTAATGGACATACAAGTAGGAAAAAGGATAAATTCTTTCTA
AACTTCCAGAAATTCTGAATTAAACCTTCCTAGATACTAGTTTTTTTTTAAAAAAAAAAAAGGT
TCTTGCCATTGTATCAATGGTGAGAAAAGACAAGAGAAGGATTTGCTCGAAATAATAGTGCAAA
TTCGCATTTGAGTGCAGTCATGATCAGGTTTATGGATATCAGAGACTCAAATGAGCATTTTTAT
GAATAAACCATCCAAATCCCCAATGTACAAAATTGTATGTTTGTGTTCCCATCTTCTCTAACTA
AACCCATAAGATGTGATCCATCTATCCCTTGCCAAACAGTTCATGTTGGTGAATGCATAATTCC
ATCTAATGATCTAATATATGAGTTAGCAGTAGATATGTCCCTTGTAACAGAGTAATTCTCCTGG
CTTAGTCACAGCTGGCAAATAAAAAAGCAACAGACGTTGCTAAATACAATGCTGAACTAAGCAT
ATGCATGTCTAAACTAGCCAAATAGTGCTACGACATTATCATACAACATGTTATCAAATTTCAA
CACTTCGGAAAACAGGTTAAACATTTATTTTATGCATGAATAAAAACGTTATGAAATGCAAGCA
TTTTCAACATAGAGGTGTATACTCGTTCCCTCCAAATTTACATAAAATGAAGTATCAAATATCA
TATGAATAATCATTCATCAAAATGAGTAAAATGTACAATTAGCATCAAGAAGCAATGCACCTTC
GAGTTTGCACCCCACTCAGGCTTGTCTCAATGACAATCATTGAGAATATAACTCCAGAAAAGCC
AATGGAGCATTCATCCACAAGAAAGTGGAGAGGATAGAGCGGATTGTAAGCCGCCAAGAAAGCA
ATGATGAGATGAAAAATCGCATTAGTCGTAGCAAGAAGAAACATCAAGAACAAGAGACGGACTG
ATCCCATAATTCTTTCCAACTCAGTGCCCAAGGGTACCAAGGCCAGCATGTTGAATAGCACATG
AAGCAAAGAACCATGAAATACAACAGATGTATAGAACCTGTACA
Conservation Information
Conserved circRNAs NA
PMCS 0.104205743
Functional Information
Coding potential Y
Potential coding position 25284914-25280564(+)
25284943-25280581(+)
25280414-25284874(-)
25280388-25284833(-)
Potential amino acid sequence MKQRTMKYNRCIEPVHFSKPIPTSFLSSSSNVSTWSAATVASALTVFAAGCLL*(+)
MYRTCTLFKAHSNQLLKFFIKCINLVSCYSCISSDCVCCWMPIVMENQK*(+)
MKNLRSWLEWALKSVQVLYICCISWFFASCAIQHAGLGTLGH*(-)
MGFEKCTGSIHLLYFMVLCFMCYSTCWPWYPWALSWKELWDQSVSCS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017