Detail information of AT2G06010_circ_g.1


General Information
CircRNA Name AT2G06010_circ_g.1
ID in PlantcircBase ath_circ_012954
Alias At_ciR2251
Organism Arabidpsis thaliana
Position chr2: 2338033-2338208  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ, CIRI-full
Parent gene AT2G06010
Parent gene annotation OBP3-responsive protein 4 (ORG4)
Parent gene strand +
Alternative splicing NA
Support reads 4
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G06010.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCGAAATAAAACTACTCTTGGTCTTAGTCCTGGTATCGATTTCCGGTTTGGATGGAGAGCTGA
TTTTGTACTCCCAGAGGTTACTGGgttggtgttggacataactttcaaatgaatgcaattggtt
ggaaatggaagcttacttcatgtttgggtggagatggtgtgtctcgga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 176
Transcript exons: 2338033-2338208
GTTGGTGTTGGACATAACTTTCAAATGAATGCAATTGGTTGGAAATGGAAGCTTACTTCATGTT
TGGGTGGAGATGGTGTGTCTCGGATTCGAAATAAAACTACTCTTGGTCTTAGTCCTGGTATCGA
TTTCCGGTTTGGATGGAGAGCTGATTTTGTACTCCCAGAGGTTACTGG

Genomic sequence GTTGGTGTTGGACATAACTTTCAAATGAATGCAATTGGTTGGAAATGGAAGCTTACTTCATGTT
TGGGTGGAGATGGTGTGTCTCGGATTCGAAATAAAACTACTCTTGGTCTTAGTCCTGGTATCGA
TTTCCGGTTTGGATGGAGAGCTGATTTTGTACTCCCAGAGGTTACTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.492527463
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015