Plant Circular RNA Database

Detail information of AT4G36210_circ_g.2

			
						 General Information
					
						CircRNA Name
						AT4G36210_circ_g.2
					
						ID in PlantcircBase
						ath_circ_034980
					
						Alias
						4:17131667-17133299
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 17131667-17133299  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT4G36210						
					
						Parent gene annotation
						
							Protein of unknown function (DUF726)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT4G36210_circ_g.1 AT4G36210_circ_g.3 AT4G36210_circ_g.4 AT4G36210_circ_g.5 AT4G36210_circ_g.6 AT4G36210_circ_g.7 AT4G36210_circ_g.8 AT4G36210_circ_g.9 AT4G36210_circ_g.10 AT4G36210_circ_g.11 AT4G36210_circ_g.12 						
					
						Support reads
						1/1
					
						Tissues
						root;flower
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT4G36210.3:7
AT4G36210.2:7
AT4G36210.1:7

General Information
CircRNA Name	AT4G36210_circ_g.2
ID in PlantcircBase	ath_circ_034980
Alias	4:17131667-17133299
Organism	Arabidpsis thaliana
Position	chr4: 17131667-17133299 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT4G36210
Parent gene annotation	Protein of unknown function (DUF726)
Parent gene strand	+
Alternative splicing	AT4G36210_circ_g.1 AT4G36210_circ_g.3 AT4G36210_circ_g.4 AT4G36210_circ_g.5 AT4G36210_circ_g.6 AT4G36210_circ_g.7 AT4G36210_circ_g.8 AT4G36210_circ_g.9 AT4G36210_circ_g.10 AT4G36210_circ_g.11 AT4G36210_circ_g.12
Support reads	1/1
Tissues	root;flower
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT4G36210.3:7 AT4G36210.2:7 AT4G36210.1:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGTGAACTAAATCCGTGACTATTATAATCTACTCCTGTAGGTCGGATAAAGCAGGAAGACTTCT
AGCTGAAGTGCTACAAAAAGGCTTGCAAGGAAATAGgaagcaattgagacaatggtcgcatgct
ctgccatggccattcagaagtctgctgaaatgaagggtgaagataatctaactcctacgacttc
atgggcta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 779
Transcript exons: 17131667-17131835,17131925-17132077,17132248-17132345,17
132534-17132625,17132783-17132853,17132943-17133078,1713
3240-17133299
GAAGCAATTGAGACAATGGTCGCATGCTCTGCCATGGCCATTCAGAAGTCTGCTGAAATGAAGG
GTGAAGATAATCTAACTCCTACGACTTCATGGGCTAAGTGGAAGCGAGGAGGCATCATTGGTGC
CGCTGCTATTACAGGAGGCACTTTGATGGCCATAACTGGTGGATTGGCTGCTCCAGCTATAGCT
GCAGGATTTGGTGCATTGGCACCAACACTGGGCACAATTATTCCGGTGATTGGAGCTGGGGGTT
TTGCTGCTGCGGCTAGTGCCGCAGGAACTGTTGCTGGCTCCGTTGCGGTTGCAGCATCGTTTGG
AGCTGCTGGAGCTGGTCTCACAGGGACTAAGATGGCAAGGAGAATTGGGGACCTTGATGAGTTC
GAATTTAAAGCTATTGGCGAAAATCATAATCAAGGACGGTTAGCAGTGGAAGTCTTGGTTGCTG
GTGTTGTTTTTGAAGAAGAAGATTTTGTGAAACCATGGGAAGGGTTAACTAGTAATCTGGAGAG
GTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTT
ACTTCAAGACTTGCAATGGAATTGATGAAACAGGGAGCAATGCACACTGTGTTGGCCTCTCTTT
TAATGGCATTGGCATGGCCAGCGACAATCTTAGTAGCTGCTGATTTCATAGATAGCAAATGGAG
TATTGCTATTGACAGGTCGGATAAAGCAGGAAGACTTCTAGCTGAAGTGCTACAAAAAGGCTTG
CAAGGAAATAG
						
					

						Genomic sequence
						
							GAAGCAATTGAGACAATGGTCGCATGCTCTGCCATGGCCATTCAGAAGTCTGCTGAAATGAAGG
GTGAAGATAATCTAACTCCTACGACTTCATGGGCTAAGTGGAAGCGAGGAGGCATCATTGGTGC
CGCTGCTATTACAGGAGGCACTTTGATGGCCATAACTGGTGGTACGGCAAATTCAAAGCGTTAA
CATTCTAAATTAGAGCATATTTTGAACTGGTTACCTATCTTACATTTACATGGTTATATTCAAC
AGGATTGGCTGCTCCAGCTATAGCTGCAGGATTTGGTGCATTGGCACCAACACTGGGCACAATT
ATTCCGGTGATTGGAGCTGGGGGTTTTGCTGCTGCGGCTAGTGCCGCAGGAACTGTTGCTGGCT
CCGTTGCGGTTGCAGCATCGTTTGGAGGTGAATAAGAGTAGATGAGTTCACTTTTTGCACTATA
TGGATAATCAGTGTGCTTACAACTAGGCACTAGGTGTTTTGGTTTCTCTTTCATCCCCATTAAT
GTATTAAATCTTTGTTAAGGAGCGTTTACAATGTCACTGGTGCTTCGTTTTAAATGTTTTCGTA
TCCAGCTGCTGGAGCTGGTCTCACAGGGACTAAGATGGCAAGGAGAATTGGGGACCTTGATGAG
TTCGAATTTAAAGCTATTGGCGAAAATCATAATCAAGGAGTAAGTTCATATTTCCCTATGCTAC
TAGATTATTGTGACATATCATAATTTTGCAGTTTGGAGAACGAAATATTGGTTGTATTTCCTCT
CCCTCCTTCATCTGGAAATCTCCTTGCTCTGAGTTTTCCCGTTTTTGAGGGCCACGTTTTTCGC
TGATGGGAACAGTTTTGTGGAAATCAATGTAACAGCGGTTAGCAGTGGAAGTCTTGGTTGCTGG
TGTTGTTTTTGAAGAAGAAGATTTTGTGAAACCATGGGAAGGGTTAACTAGTAATCTGGAGAGG
TATATGTCGTTCGAGAACTTTAGTATCTTAATAAGGAAATAGGATTTAACATCTGGAGCTTCTC
CTTGCGTTGGCTTTACTCATTCACGTTTGTACTGATTCTCAAGAAGTGAACTATAGTTGCTTCT
ATAATAGTCTGATTTCTTACTATTCCAGGTACACGCTGCAATGGGAGTCCAAGAATCTTATCTT
AGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAGTAATTGGTTTTTATCCTACTAAATAACA
TGTTGATGTAAAAATGTCAAATTACTAAGATTATTGTGGTATTGATTATGATTTCTCCAGGACT
TGCAATGGAATTGATGAAACAGGGAGCAATGCACACTGTGTTGGCCTCTCTTTTAATGGCATTG
GCATGGCCAGCGACAATCTTAGTAGCTGCTGATTTCATAGATAGCAAATGGAGTATTGCTATTG
ACAGGTAACGCCTTTTCCCTTGCTAAGTAGTCAGTCTATGATTGAAGATGATGCACCATTTACC
CATCACATCTCCAAATAATGACCAATTACTTTGAAACTTTTGGTATTGGTTTTGCATTTGAAGT
GAACTAAATCCGTGACTATTATAATCTACTCCTGTAGGTCGGATAAAGCAGGAAGACTTCTAGC
TGAAGTGCTACAAAAAGGCTTGCAAGGAAATAG
						
					

			
		

Sequences
Splice junction sequence	AGTGAACTAAATCCGTGACTATTATAATCTACTCCTGTAGGTCGGATAAAGCAGGAAGACTTCT AGCTGAAGTGCTACAAAAAGGCTTGCAAGGAAATAGgaagcaattgagacaatggtcgcatgct ctgccatggccattcagaagtctgctgaaatgaagggtgaagataatctaactcctacgacttc atgggcta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 779 Transcript exons: 17131667-17131835,17131925-17132077,17132248-17132345,17 132534-17132625,17132783-17132853,17132943-17133078,1713 3240-17133299 GAAGCAATTGAGACAATGGTCGCATGCTCTGCCATGGCCATTCAGAAGTCTGCTGAAATGAAGG GTGAAGATAATCTAACTCCTACGACTTCATGGGCTAAGTGGAAGCGAGGAGGCATCATTGGTGC CGCTGCTATTACAGGAGGCACTTTGATGGCCATAACTGGTGGATTGGCTGCTCCAGCTATAGCT GCAGGATTTGGTGCATTGGCACCAACACTGGGCACAATTATTCCGGTGATTGGAGCTGGGGGTT TTGCTGCTGCGGCTAGTGCCGCAGGAACTGTTGCTGGCTCCGTTGCGGTTGCAGCATCGTTTGG AGCTGCTGGAGCTGGTCTCACAGGGACTAAGATGGCAAGGAGAATTGGGGACCTTGATGAGTTC GAATTTAAAGCTATTGGCGAAAATCATAATCAAGGACGGTTAGCAGTGGAAGTCTTGGTTGCTG GTGTTGTTTTTGAAGAAGAAGATTTTGTGAAACCATGGGAAGGGTTAACTAGTAATCTGGAGAG GTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTT ACTTCAAGACTTGCAATGGAATTGATGAAACAGGGAGCAATGCACACTGTGTTGGCCTCTCTTT TAATGGCATTGGCATGGCCAGCGACAATCTTAGTAGCTGCTGATTTCATAGATAGCAAATGGAG TATTGCTATTGACAGGTCGGATAAAGCAGGAAGACTTCTAGCTGAAGTGCTACAAAAAGGCTTG CAAGGAAATAG
Genomic sequence	GAAGCAATTGAGACAATGGTCGCATGCTCTGCCATGGCCATTCAGAAGTCTGCTGAAATGAAGG GTGAAGATAATCTAACTCCTACGACTTCATGGGCTAAGTGGAAGCGAGGAGGCATCATTGGTGC CGCTGCTATTACAGGAGGCACTTTGATGGCCATAACTGGTGGTACGGCAAATTCAAAGCGTTAA CATTCTAAATTAGAGCATATTTTGAACTGGTTACCTATCTTACATTTACATGGTTATATTCAAC AGGATTGGCTGCTCCAGCTATAGCTGCAGGATTTGGTGCATTGGCACCAACACTGGGCACAATT ATTCCGGTGATTGGAGCTGGGGGTTTTGCTGCTGCGGCTAGTGCCGCAGGAACTGTTGCTGGCT CCGTTGCGGTTGCAGCATCGTTTGGAGGTGAATAAGAGTAGATGAGTTCACTTTTTGCACTATA TGGATAATCAGTGTGCTTACAACTAGGCACTAGGTGTTTTGGTTTCTCTTTCATCCCCATTAAT GTATTAAATCTTTGTTAAGGAGCGTTTACAATGTCACTGGTGCTTCGTTTTAAATGTTTTCGTA TCCAGCTGCTGGAGCTGGTCTCACAGGGACTAAGATGGCAAGGAGAATTGGGGACCTTGATGAG TTCGAATTTAAAGCTATTGGCGAAAATCATAATCAAGGAGTAAGTTCATATTTCCCTATGCTAC TAGATTATTGTGACATATCATAATTTTGCAGTTTGGAGAACGAAATATTGGTTGTATTTCCTCT CCCTCCTTCATCTGGAAATCTCCTTGCTCTGAGTTTTCCCGTTTTTGAGGGCCACGTTTTTCGC TGATGGGAACAGTTTTGTGGAAATCAATGTAACAGCGGTTAGCAGTGGAAGTCTTGGTTGCTGG TGTTGTTTTTGAAGAAGAAGATTTTGTGAAACCATGGGAAGGGTTAACTAGTAATCTGGAGAGG TATATGTCGTTCGAGAACTTTAGTATCTTAATAAGGAAATAGGATTTAACATCTGGAGCTTCTC CTTGCGTTGGCTTTACTCATTCACGTTTGTACTGATTCTCAAGAAGTGAACTATAGTTGCTTCT ATAATAGTCTGATTTCTTACTATTCCAGGTACACGCTGCAATGGGAGTCCAAGAATCTTATCTT AGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAGTAATTGGTTTTTATCCTACTAAATAACA TGTTGATGTAAAAATGTCAAATTACTAAGATTATTGTGGTATTGATTATGATTTCTCCAGGACT TGCAATGGAATTGATGAAACAGGGAGCAATGCACACTGTGTTGGCCTCTCTTTTAATGGCATTG GCATGGCCAGCGACAATCTTAGTAGCTGCTGATTTCATAGATAGCAAATGGAGTATTGCTATTG ACAGGTAACGCCTTTTCCCTTGCTAAGTAGTCAGTCTATGATTGAAGATGATGCACCATTTACC CATCACATCTCCAAATAATGACCAATTACTTTGAAACTTTTGGTATTGGTTTTGCATTTGAAGT GAACTAAATCCGTGACTATTATAATCTACTCCTGTAGGTCGGATAAAGCAGGAAGACTTCTAGC TGAAGTGCTACAAAAAGGCTTGCAAGGAAATAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.240182785

Conservation Information
Conserved circRNAs	NA
PMCS	0.240182785

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT4G36210_circ_g.2

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