Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os08g0440000_circ_g.1 |
ID in PlantcircBase | osa_circ_037202 |
Alias | NA |
Organism | Oryza sativa |
Position | chr8: 21401425-21402037 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os08g0440000 |
Parent gene annotation |
Vesicle transport v-SNARE family protein. (Os08t0440000-01);Vesi cle transport v-SNARE family protein. (Os08t0440000-02) |
Parent gene strand | - |
Alternative splicing | Os08g0440000_circ_g.2 Os08g0440000_circ_g.3 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os08t0440000-01:2 Os08t0440000-02:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_017929 |
PMCS | 0.385432123 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
21401849-21401441(+) 21402006-21401427(-) 21401500-21402027(-) |
Potential amino acid sequence |
MYEKGLLSLLMIPMSAFENLLAEVASAIFLYRTRYHSQNHQISWKSIYGKHSFGHLTELLASLP AQYSC*(+) MSAYRKLISMKSDGSENDIESDIERSLKQLQQVNSQMQTWVSSGGSEVLSHTLTRHMEILQDLT QEFYRLRSSLRAKQQHASLLDLRDFDRAKFDVEEGADSDQALLKEQAAISRSTGQARRLEAQLD DQMSAYRKLISMKSDGSENDIESDIERSLKQLQQVNSQMQTWVSSGGSEVLSHTLTRHMEILQD LTQEFYRLRSSLRAKQQHASLLDLRDFDRAKFDVEEGADSDQALLKEQAAISRSTGQARRLEAQ LDDQMSAYRKLISMKSDGSENDIESDIERSLKQLQQVNSQMQTWVSSGGSEVLSHTLTRHMEIL QDLTQEFYRLRSSLRAKQQHASLLDLRDFDRAKFDVEEGADSDQALLKEQAAISRSTGQARRLE AQLDDQMSAYRKLISMKSDGSENDIESDIERSLKQLQQVNSQMQTWVSSGGSEVLSHTLTRHME ILQDLTQEFYRLRSSLRAKQQHASLLDLRDFDRAKFDVEEGADSDQALLKEQAAISRSTGQ(-) MLKRVLTLIKLCSKNKLRSAGVLGRQGG*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |