Detail information of Os08g0440000_circ_g.1


General Information
CircRNA Name Os08g0440000_circ_g.1
ID in PlantcircBase osa_circ_037202
Alias NA
Organism Oryza sativa
Position chr8: 21401425-21402037  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0440000
Parent gene annotation Vesicle transport v-SNARE family protein. (Os08t0440000-01);Vesi
cle transport v-SNARE family protein. (Os08t0440000-02)
Parent gene strand -
Alternative splicing Os08g0440000_circ_g.2 Os08g0440000_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0440000-01:2
Os08t0440000-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCGGACTCGATATCATTCTCAGAACCATCAGATTTCATGGAAATCAATTTACGGTAAGCACT
CATTTGGTCATCTAACTGAGCTTCTAGCCTCCTTGCctgcccagtactcctgctgatcgcagct
tgttctttgagcagagcttgatcagagtcagcaccctcttcaacatcaaacttcgctctgtcaa
aatctctc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 390
Transcript exons: 21401425-21401586,21401810-21402037
CTGCCCAGTACTCCTGCTGATCGCAGCTTGTTCTTTGAGCAGAGCTTGATCAGAGTCAGCACCC
TCTTCAACATCAAACTTCGCTCTGTCAAAATCTCTCAAGTCAAGAAGAGAAGCATGTTGTTGCT
TTGCTCTAAGGCTTGATCGGAGGCGATAGAATTCCTGTGTAAGGTCTTGCAATATCTCCATATG
ACGAGTCAATGTATGAGAAAGGACTTCTGAGCCTCCTGATGATACCCATGTCTGCATTTGAGAA
TTTACTTGCTGAAGTTGCTTCAGCGATCTTTCTATATCGGACTCGATATCATTCTCAGAACCAT
CAGATTTCATGGAAATCAATTTACGGTAAGCACTCATTTGGTCATCTAACTGAGCTTCTAGCCT
CCTTGC

Genomic sequence CTGCCCAGTACTCCTGCTGATCGCAGCTTGTTCTTTGAGCAGAGCTTGATCAGAGTCAGCACCC
TCTTCAACATCAAACTTCGCTCTGTCAAAATCTCTCAAGTCAAGAAGAGAAGCATGTTGTTGCT
TTGCTCTAAGGCTTGATCGGAGGCGATAGAATTCCTGCATTCAATTGTAGCAACATTATGAATC
TGAAAGTATCGTTATCATGTATTCGTAAAGTTTTGCTCCACTGAGCATCAGAAAAACCTGCAGT
GCTTTTTAAGATTAAGTAAAATAATCCTCATGAAGAAGGTAATTTGCAAGAAGCTTGCCTGAAG
CTTATTGAAACGGAGCTAATCACAATTGCTAGGAACTGAAAAGAGGTGGAGGAAACAACTGTAA
CCTGTGTAAGGTCTTGCAATATCTCCATATGACGAGTCAATGTATGAGAAAGGACTTCTGAGCC
TCCTGATGATACCCATGTCTGCATTTGAGAATTTACTTGCTGAAGTTGCTTCAGCGATCTTTCT
ATATCGGACTCGATATCATTCTCAGAACCATCAGATTTCATGGAAATCAATTTACGGTAAGCAC
TCATTTGGTCATCTAACTGAGCTTCTAGCCTCCTTGC
Conservation Information
Conserved circRNAs osi_circ_017929
PMCS 0.385432123
Functional Information
Coding potential Y
Potential coding position 21401849-21401441(+)
21402006-21401427(-)
21401500-21402027(-)
Potential amino acid sequence MYEKGLLSLLMIPMSAFENLLAEVASAIFLYRTRYHSQNHQISWKSIYGKHSFGHLTELLASLP
AQYSC*(+)
MSAYRKLISMKSDGSENDIESDIERSLKQLQQVNSQMQTWVSSGGSEVLSHTLTRHMEILQDLT
QEFYRLRSSLRAKQQHASLLDLRDFDRAKFDVEEGADSDQALLKEQAAISRSTGQARRLEAQLD
DQMSAYRKLISMKSDGSENDIESDIERSLKQLQQVNSQMQTWVSSGGSEVLSHTLTRHMEILQD
LTQEFYRLRSSLRAKQQHASLLDLRDFDRAKFDVEEGADSDQALLKEQAAISRSTGQARRLEAQ
LDDQMSAYRKLISMKSDGSENDIESDIERSLKQLQQVNSQMQTWVSSGGSEVLSHTLTRHMEIL
QDLTQEFYRLRSSLRAKQQHASLLDLRDFDRAKFDVEEGADSDQALLKEQAAISRSTGQARRLE
AQLDDQMSAYRKLISMKSDGSENDIESDIERSLKQLQQVNSQMQTWVSSGGSEVLSHTLTRHME
ILQDLTQEFYRLRSSLRAKQQHASLLDLRDFDRAKFDVEEGADSDQALLKEQAAISRSTGQ(-)
MLKRVLTLIKLCSKNKLRSAGVLGRQGG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017