Plant Circular RNA Database

Detail information of Os02g0773300_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0773300_circ_g.1
					
						ID in PlantcircBase
						osa_circ_016722
					
						Alias
						Os_ciR8126
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 32645913-32647821  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os02g0773300						
					
						Parent gene annotation
						
							Pyridoxal phosphate-dependent deaminase family protein. (Os02t07
73300-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0773300_circ_g.2 Os02g0773300_circ_g.3 						
					
						Support reads
						2/1
					
						Tissues
						root/shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0773300-01:6

General Information
CircRNA Name	Os02g0773300_circ_g.1
ID in PlantcircBase	osa_circ_016722
Alias	Os_ciR8126
Organism	Oryza sativa
Position	chr2: 32645913-32647821 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os02g0773300
Parent gene annotation	Pyridoxal phosphate-dependent deaminase family protein. (Os02t07 73300-01)
Parent gene strand	-
Alternative splicing	Os02g0773300_circ_g.2 Os02g0773300_circ_g.3
Support reads	2/1
Tissues	root/shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0773300-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTATAACGCAGTCAGCGCCCTGCGCGACGGCATCTGCCATCAGGAACTCGAGCTTCCGGACCTT
GTTCCCGCTCAACTGCATGCCTGAGATGTCGTCTCGattttcaatgttgactaaatcatgtgaa
cgcaaatcagaatgaagtccatcaatcaggtcttgaacataggaatggaaatatccaggatcat
cacaaaca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 660
Transcript exons: 32645913-32646026,32646096-32646153,32646285-32646374,32
646921-32647012,32647405-32647515,32647627-32647821
ATTTTCAATGTTGACTAAATCATGTGAACGCAAATCAGAATGAAGTCCATCAATCAGGTCTTGA
ACATAGGAATGGAAATATCCAGGATCATCACAAACAGAGAAAGCATGGACTTTTGCCTTTAAGC
TACTCAATTTTGATCCTAAAGCAAGACCAGCAATGGTTCCACCGCTGCCACATGCAACAACAAT
GTCGTCAAACTGAACATCACCTGATATCTGAATTTGATGTTCAATCTCCCTTATTGCTTCTATA
TATCCCCAAGTTCCTAGAGAGTTTGATCCACCAACAGGAATAACATATGGTTTTCGGCCTTCTT
CCAAAAGCTTCTTTTTCAGCAAGTCCGCTAAAGCCACACTGCCAATTTTTCCATATTCTTCTTT
TGAAACAAGATCAATATGCGCTCCCACCAATCTCTCAACAAGGAGATTCCCAACCAAACCAGGG
TCCTTATCCACAAGAAGCTTGGATGTGCGCAGTATCAGATAACAATCAAGATTTATATACTTTG
CAGCCACTGCGGTGGCACGGCAGTGATTGCTCTGGATGCCACCTACAGTTATAACGCAGTCAGC
GCCCTGCGCGACGGCATCTGCCATCAGGAACTCGAGCTTCCGGACCTTGTTCCCGCTCAACTGC
ATGCCTGAGATGTCGTCTCG
						
					

						Genomic sequence
						
							ATTTTCAATGTTGACTAAATCATGTGAACGCAAATCAGAATGAAGTCCATCAATCAGGTCTTGA
ACATAGGAATGGAAATATCCAGGATCATCACAAACAGAGAAAGCATGGACCTATCCTAAAAATG
GATAATTAGTCGAACAATTTCAGCAGGATAGAAAACAATCAAAGAAAGTGCATACTTTTGCCTT
TAAGCTACTCAATTTTGATCCTAAAGCAAGACCAGCAATGGTTCCACCGCTGCATAAATTTAAA
AATCATTCAAGTCATAAAGCAGCAATTGCTACTTTCAGGAACTAGGCATGACGCAATAACAAGT
GAGTACATAAGTACCCCTTAAAAGTAAAGAATGGTGCGTATTGACAAAATACCTGCCACATGCA
ACAACAATGTCGTCAAACTGAACATCACCTGATATCTGAATTTGATGTTCAATCTCCCTTATTG
CTTCTATATATCCCCTATCAAGAAACAAAACAAGTTCTGATTTACAAAAAGAAAAAGGAAACAA
TACAAGTTACAAAGATAGGTCAAGTTTCAACAATCGGGTATCACTTTCACAAATTCTGAGACCT
GTTTGAACTTTGAAGTGCAAACCTTCTCTTTACAGTAATCTTATATTCTATTCAATGTTGTTGA
TTAAATGTGGATAGAATACACTACATTTGTCCTTCAGCTATGCTCCACTTGTTAGCCACCACAC
AAGATAGAACCGGATCTTCTAGTGTTGCATGAGATCCACTAGATTCAGAGCCTAGGGCCTTAGA
CAATTCCAACATTCCAGGTCCAACATAGTATATTGACCAATAGAAATTTGCCAAAAAAAAGTGA
TGCCCTAATGTTTATTCAAATACAAACTAATCTCTTCTTTTCTGATAGACTGATGGCAAACACC
AATCCATGAATAATAATAGTCCCTGAGGAATATTCAAAGTATGCTATAAACGCACAAAGAAATT
GAAAATGCAAAAATGGTTCAATAGTTAGGATTGAACAGAAAACAATACCAAGTTCCTAGAGAGT
TTGATCCACCAACAGGAATAACATATGGTTTTCGGCCTTCTTCCAAAAGCTTCTTTTTCAGCAA
GTCCGCTAAAGCCTGAACCAAATAAATCCATACTAGGCTTAGGGACTTTTAAGCAATATCAATA
TGAATAAAGAAGTTCTAACAAGAAAAAGATCACTCAGATATTTTAATAGGCAATGCCACTTTAC
CAGTTTATCTACATACATATTCAAAGAATAGGCAATATAATCATGATCTTTCCTCAGAATAGGG
AAAAAATGACCATGCTAATTGTATGATGCAGACATATACTGCAGGATGCATTACTTGATTGGAC
CTTTAGCCCCTTTAATAACTACTTGAGTATGGATATCAAGTATCAGTATAACACCAAAATATAA
AAAGTTCCTTTGCTACACATGGCCCGATGGAATTATGAAAATAATAATAAAAGCAATAATAGCA
CATCATCGAAAAGAGCATACCACACTGCCAATTTTTCCATATTCTTCTTTTGAAACAAGATCAA
TATGCGCTCCCACCAATCTCTCAACAAGGAGATTCCCAACCAAACCAGGGTCCTTATCCACAAG
AAGCTGAATGTGAACATGCCCCACCAAAACTAGGTTAGCCCAAATATGCTACCACACGATATCA
TATCAATTTAATGATTTAATAACCTCATAAGTCATAAGTACAAAGATCACCTTGGATGTGCGCA
GTATCAGATAACAATCAAGATTTATATACTTTGCAGCCACTGCGGTGGCACGGCAGTGATTGCT
CTGGATGCCACCTACAGTTATAACGCAGTCAGCGCCCTGCGCGACGGCATCTGCCATCAGGAAC
TCGAGCTTCCGGACCTTGTTCCCGCTCAACTGCATGCCTGAGATGTCGTCTCG
						
					

			
		

Sequences
Splice junction sequence	TTATAACGCAGTCAGCGCCCTGCGCGACGGCATCTGCCATCAGGAACTCGAGCTTCCGGACCTT GTTCCCGCTCAACTGCATGCCTGAGATGTCGTCTCGattttcaatgttgactaaatcatgtgaa cgcaaatcagaatgaagtccatcaatcaggtcttgaacataggaatggaaatatccaggatcat cacaaaca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 660 Transcript exons: 32645913-32646026,32646096-32646153,32646285-32646374,32 646921-32647012,32647405-32647515,32647627-32647821 ATTTTCAATGTTGACTAAATCATGTGAACGCAAATCAGAATGAAGTCCATCAATCAGGTCTTGA ACATAGGAATGGAAATATCCAGGATCATCACAAACAGAGAAAGCATGGACTTTTGCCTTTAAGC TACTCAATTTTGATCCTAAAGCAAGACCAGCAATGGTTCCACCGCTGCCACATGCAACAACAAT GTCGTCAAACTGAACATCACCTGATATCTGAATTTGATGTTCAATCTCCCTTATTGCTTCTATA TATCCCCAAGTTCCTAGAGAGTTTGATCCACCAACAGGAATAACATATGGTTTTCGGCCTTCTT CCAAAAGCTTCTTTTTCAGCAAGTCCGCTAAAGCCACACTGCCAATTTTTCCATATTCTTCTTT TGAAACAAGATCAATATGCGCTCCCACCAATCTCTCAACAAGGAGATTCCCAACCAAACCAGGG TCCTTATCCACAAGAAGCTTGGATGTGCGCAGTATCAGATAACAATCAAGATTTATATACTTTG CAGCCACTGCGGTGGCACGGCAGTGATTGCTCTGGATGCCACCTACAGTTATAACGCAGTCAGC GCCCTGCGCGACGGCATCTGCCATCAGGAACTCGAGCTTCCGGACCTTGTTCCCGCTCAACTGC ATGCCTGAGATGTCGTCTCG
Genomic sequence	ATTTTCAATGTTGACTAAATCATGTGAACGCAAATCAGAATGAAGTCCATCAATCAGGTCTTGA ACATAGGAATGGAAATATCCAGGATCATCACAAACAGAGAAAGCATGGACCTATCCTAAAAATG GATAATTAGTCGAACAATTTCAGCAGGATAGAAAACAATCAAAGAAAGTGCATACTTTTGCCTT TAAGCTACTCAATTTTGATCCTAAAGCAAGACCAGCAATGGTTCCACCGCTGCATAAATTTAAA AATCATTCAAGTCATAAAGCAGCAATTGCTACTTTCAGGAACTAGGCATGACGCAATAACAAGT GAGTACATAAGTACCCCTTAAAAGTAAAGAATGGTGCGTATTGACAAAATACCTGCCACATGCA ACAACAATGTCGTCAAACTGAACATCACCTGATATCTGAATTTGATGTTCAATCTCCCTTATTG CTTCTATATATCCCCTATCAAGAAACAAAACAAGTTCTGATTTACAAAAAGAAAAAGGAAACAA TACAAGTTACAAAGATAGGTCAAGTTTCAACAATCGGGTATCACTTTCACAAATTCTGAGACCT GTTTGAACTTTGAAGTGCAAACCTTCTCTTTACAGTAATCTTATATTCTATTCAATGTTGTTGA TTAAATGTGGATAGAATACACTACATTTGTCCTTCAGCTATGCTCCACTTGTTAGCCACCACAC AAGATAGAACCGGATCTTCTAGTGTTGCATGAGATCCACTAGATTCAGAGCCTAGGGCCTTAGA CAATTCCAACATTCCAGGTCCAACATAGTATATTGACCAATAGAAATTTGCCAAAAAAAAGTGA TGCCCTAATGTTTATTCAAATACAAACTAATCTCTTCTTTTCTGATAGACTGATGGCAAACACC AATCCATGAATAATAATAGTCCCTGAGGAATATTCAAAGTATGCTATAAACGCACAAAGAAATT GAAAATGCAAAAATGGTTCAATAGTTAGGATTGAACAGAAAACAATACCAAGTTCCTAGAGAGT TTGATCCACCAACAGGAATAACATATGGTTTTCGGCCTTCTTCCAAAAGCTTCTTTTTCAGCAA GTCCGCTAAAGCCTGAACCAAATAAATCCATACTAGGCTTAGGGACTTTTAAGCAATATCAATA TGAATAAAGAAGTTCTAACAAGAAAAAGATCACTCAGATATTTTAATAGGCAATGCCACTTTAC CAGTTTATCTACATACATATTCAAAGAATAGGCAATATAATCATGATCTTTCCTCAGAATAGGG AAAAAATGACCATGCTAATTGTATGATGCAGACATATACTGCAGGATGCATTACTTGATTGGAC CTTTAGCCCCTTTAATAACTACTTGAGTATGGATATCAAGTATCAGTATAACACCAAAATATAA AAAGTTCCTTTGCTACACATGGCCCGATGGAATTATGAAAATAATAATAAAAGCAATAATAGCA CATCATCGAAAAGAGCATACCACACTGCCAATTTTTCCATATTCTTCTTTTGAAACAAGATCAA TATGCGCTCCCACCAATCTCTCAACAAGGAGATTCCCAACCAAACCAGGGTCCTTATCCACAAG AAGCTGAATGTGAACATGCCCCACCAAAACTAGGTTAGCCCAAATATGCTACCACACGATATCA TATCAATTTAATGATTTAATAACCTCATAAGTCATAAGTACAAAGATCACCTTGGATGTGCGCA GTATCAGATAACAATCAAGATTTATATACTTTGCAGCCACTGCGGTGGCACGGCAGTGATTGCT CTGGATGCCACCTACAGTTATAACGCAGTCAGCGCCCTGCGCGACGGCATCTGCCATCAGGAAC TCGAGCTTCCGGACCTTGTTCCCGCTCAACTGCATGCCTGAGATGTCGTCTCG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.239441186

Conservation Information
Conserved circRNAs	NA
PMCS	0.239441186

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							32647710-32645952(+)
32647805-32645915(-)
						
						Potential amino acid sequence
						
							MPPTVITQSAPCATASAIRNSSFRTLFPLNCMPEMSSRFSMLTKSCERKSE*(+)
MQLSGNKVRKLEFLMADAVAQGADCVITVGGIQSNHCRATAVAAKYINLDCYLILRTSKLLVDK
DPGLVGNLLVERLVGAHIDLVSKEEYGKIGSVALADLLKKKLLEEGRKPYVIPVGGSNSLGTWG
YIEAIREIEHQIQISGDVQFDDIVVACGSGGTIAGLALGSKLSSLKAKVHAFSVCDDPGYFHSY
VQDLIDGLHSDLRSHDLVNIENRDDISGMQLSGNKVRKLEFLMADAVAQGADCVITVGGIQSNH
CRATAVAAKYINLDCYLILRTSKLLVDKDPGLVGNLLVERLVGAHIDLVSKEEYGKIGSVALAD
LLKKKLLEEGRKPYVIPVGGSNSLGTWGYIEAIREIEHQIQISGDVQFDDIVVACGSGGTIAGL
ALGSKLSSLKAKVHAFSVCDDPGYFHSYVQDLIDGLHSDLRSHDLVNIENRDDISGMQLSGNKV
RKLEFLMADAVAQGADCVITVGGIQSNHCRATAVAAKYINLDCYLILRTSKLLVDKDPGLVGNL
LVERLVGAHIDLVSKEEYGKIGSVALADLLKKKLLEEGRKPYVIPVGGSNSLGTWGYIEAIREI
EHQIQISGDVQFDDIVVACGSGGTIAGLALGSKLSSLKAKVHAFSVCDDPGYFHSYVQDLIDGL
HSDLRSHDLVNIENRDDISGMQLSGNKVRKLEFLMADAVAQGADCVITVGGIQSNHCRATAVAA
KYINLDCYLILRTSKLLVDKDPGLVGNLLVERLVGAHIDLVSKEEYGKIGSVALADLLKKKLLE
EGRKPYVIPVGGSNSLGTWGYIEAIREIEHQIQISGDVQFDDIVVACGSGGTIAGLALGSKLSS
LKAKVHAFSVCDDPGYFHSYVQDLIDGLHSDLRSHDLVNIEN(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	32647710-32645952(+) 32647805-32645915(-)
Potential amino acid sequence	MPPTVITQSAPCATASAIRNSSFRTLFPLNCMPEMSSRFSMLTKSCERKSE*(+) MQLSGNKVRKLEFLMADAVAQGADCVITVGGIQSNHCRATAVAAKYINLDCYLILRTSKLLVDK DPGLVGNLLVERLVGAHIDLVSKEEYGKIGSVALADLLKKKLLEEGRKPYVIPVGGSNSLGTWG YIEAIREIEHQIQISGDVQFDDIVVACGSGGTIAGLALGSKLSSLKAKVHAFSVCDDPGYFHSY VQDLIDGLHSDLRSHDLVNIENRDDISGMQLSGNKVRKLEFLMADAVAQGADCVITVGGIQSNH CRATAVAAKYINLDCYLILRTSKLLVDKDPGLVGNLLVERLVGAHIDLVSKEEYGKIGSVALAD LLKKKLLEEGRKPYVIPVGGSNSLGTWGYIEAIREIEHQIQISGDVQFDDIVVACGSGGTIAGL ALGSKLSSLKAKVHAFSVCDDPGYFHSYVQDLIDGLHSDLRSHDLVNIENRDDISGMQLSGNKV RKLEFLMADAVAQGADCVITVGGIQSNHCRATAVAAKYINLDCYLILRTSKLLVDKDPGLVGNL LVERLVGAHIDLVSKEEYGKIGSVALADLLKKKLLEEGRKPYVIPVGGSNSLGTWGYIEAIREI EHQIQISGDVQFDDIVVACGSGGTIAGLALGSKLSSLKAKVHAFSVCDDPGYFHSYVQDLIDGL HSDLRSHDLVNIENRDDISGMQLSGNKVRKLEFLMADAVAQGADCVITVGGIQSNHCRATAVAA KYINLDCYLILRTSKLLVDKDPGLVGNLLVERLVGAHIDLVSKEEYGKIGSVALADLLKKKLLE EGRKPYVIPVGGSNSLGTWGYIEAIREIEHQIQISGDVQFDDIVVACGSGGTIAGLALGSKLSS LKAKVHAFSVCDDPGYFHSYVQDLIDGLHSDLRSHDLVNIEN(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0773300_circ_g.1

Address

Any questions?

Supported by