| CircRNA Name |
AT2G20050_circ_g.9 |
| ID in PlantcircBase |
ath_circ_013922 |
| Alias |
At_ciR3007, Ath_circ_FC1249, Ath_circ_FC1250, Ath_circ_FC1251, Ath_circ_FC1252, AT2G20050_C1 |
| Organism |
Arabidpsis thaliana |
| Position |
chr2: 8650728-8651232 JBrowse» |
| Reference genome |
TAIR10.38 |
| Type |
e-circRNA
|
| Identification method |
CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI2 |
| Parent gene |
AT2G20050 |
| Parent gene annotation |
Protein phosphatase 2C and cyclic nucleotide-binding/kinase doma
in-containing protein
|
| Parent gene strand |
- |
| Alternative splicing |
AT2G20050_circ_g.1 AT2G20050_circ_g.2 AT2G20050_circ_g.3 AT2G20050_circ_g.4 AT2G20050_circ_g.5 AT2G20050_circ_g.6 AT2G20050_circ_g.7 AT2G20050_circ_g.8 AT2G20050_circ_g.10 AT2G20050_circ_g.11 AT2G20050_circ_g.12 |
| Support reads |
2/8/2 |
| Tissues |
leaf/root, leaf, whole_plant/seedlings |
| Exon boundary |
Yes-Yes
"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
|
| Splicing signals |
CT-AC
The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
|
| Number of exons covered |
AT2G20050.2:2
AT2G20050.1:2
|
