Detail information of GLYMA_14G119800_circ_g.1


General Information
CircRNA Name GLYMA_14G119800_circ_g.1
ID in PlantcircBase gma_circ_009241
Alias ciRNA92
Organism Glycine max
Position chr14: 16757654-16762546  JBrowse»
Reference genome v2.0.38
Type   ui-circRNA
Identification method CIRI, CIRCexplorer
Parent gene GLYMA_14G119800
Parent gene annotation hypothetical protein
Parent gene strand -
Alternative splicing GLYMA_14G119800_circ_g.2
Support reads NA
Tissues pod
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered KRH15928:8
KRH15929:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCATTTCAACCCAAAAAACTCCTCCACACCCTCGCTGTGCCTCCAAAACAAACCCAAACACTG
AAATGTGCACTCTTCAAACACCTTCCACATGAGTCTctgaatctgcagcccgcacctgacccgg
tttcctttctttcaaaatgatgaaccccaattgtgccgcaatgaggttcaaccttgtcggaaac
cgacgacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAATCTGCAGCCCGCACCTGACCCGGTTTCCTTTCTTTCAAAATGATGAACCCCAATTGTGC
CGCAATGAGGTTCAACCTTGTCGGAAACCGACGACGCAACAGCCGCGATGCAATGAGGTTCCGT
GACGCGTAAGACACCCGTGATTGTGATTTTTGCAGAGTCCACAACGTGATGCCATTGCAATTTC
GTTTTCCCTAAAACTCGCTACGCTATAGCATGATAGTGCCGTGATAGCCGCTATTTGAAAACAC
TGATATAAAGCTCGTTGTTCAATTAGAAACGGTGACATTGCAACAGTATATGTGGATAAGATAG
CTGGGGCCTTTTGATAAAATGATACAATTTCATATTCATATTCATGTACATGCAAACAAATGTG
TTATAAAACAGTACAAAGGTCATTAACTTACCCATGGGACCAGTTCTGGTTTCTCTGCTATAAT
CTATCAAGTCTTTCATACTATTTACCACTTCTGATATCTGCAACATAAGAAAAAGAAAGGTTTG
TGAAGTTAACTAAGCAGACCCTACTCAGTACTCAATAAAGTTTATCAGAAAACATATTCGATTG
GTTCATAATTCCATAATTTTTCCAATACCTTTTTATTTACTTATCCATGGAAAATCTAAAAAGT
AAGAAGAAAAAATCACTCTCTTTAGGTAGCACGTCCAAAAGTTATTAAAGGAAAACCTTTGAGA
ACCACCCTCCCAAAAATTACCAAAAAAATATTTAAAAAAAAAACACCATGAAAATATTAAAGGG
CACATGAAAAAGAAAACTACATTTGTCAGTCTGTTCATATGCAGCACTCCAGCAGTTGAAATCA
CAATGGGATTCAACTTTATATATTAATATAGGACATGCCTCAACGAGTAGAACATTACCTGAAG
GCACCGCACGTATCTCTTTGTATATCCTAAATCATTGACCAATGGAACTTCTAAAGCTTTTGCC
AACTGACGGGCTGATGCAACAAACCTGGAAAAGTAGTAATGCAACATGTAAAATTAGGAAGAGG
AAAACAGAGACTTGTTAAATCAAGTGAACATAATTAAGTTAGACCACAAGTACATCAGGAAGAA
GTTGTATAAGTGGAAATAGGAAGGGGACATATCAGACACATCACTGAAGCCCAACTATGACAAG
ATGTGGAAAGACACGCTAATTTCCTAACGCAGCGCCTGAGTTTAGAAGTCACATAAAACCCAGG
AAAAATATCTTTGAAAATTAAAAACTATATATATATATATATATATATATATATATATATATAT
ATATATATATATATATAATTTGGATGAAATCAAAATGGCTGCAATTCCTAAATTCTTTCAAGGA
CACATGCAATGGCAGGGGAGCACAGATAAAAACCATCTCCCATTAATTAGATGTATGAGTCAAG
GATAGGTAGACTTTAAATAAGTCAAGTCATTTGTTCTTTCATTGCAACATAAACAAATTAAAAA
TAGGATTTTGTTAGAAACCACTATGAACACATTCAGAATGTAATAAAATCCAGTAACATATGAA
GCAGAAAGTTACTAATAACAAACAAATAAAGTACAAGTTTCAAGAGCAGCAACAATTTTGCAGG
TACATCATAACAATTTCGCAATAAGATCATTAATAAAATACTGTAGCTCATAAAGAATAAAGGG
AAAATGGACTCACAGATTGCAATTATTTTGTAACTCTGGAACGGATAAATTGGGTGTTGCATTT
TGAGTAAATGCCTGGTATTTTTGAGCAACTACTCCAAGTTGACTAACCTGCATACAACAATAGA
GTACATATAAGAATAAATAATCATAATGCACAACACCCTGTCATTGTCATTGGAATCAATAATC
AAAATATATAAGCAAGAATTACTCTATTAAAATCTCTAGAAATCATTCCTGGCAAAAAACAAAA
CTAGCAGCAAAACCAAGAATACATTTAGTGATGATTGGCAAACGATATTACCAAATAACAACTT
CAAAACTTGCAAGTCACATGGCACAGAACCTCAAATGGGTTACAGGGTCAGAAGGAAATGTGGG
CTCAACAATTGCCTCATGGGCCCAAAGTTTGGGAAGTTTACACCAGAAGGAATAGATGGAGAAG
ACCAAGAAGAATGACAAGCTGGCAATGAGTGAGAAAAAGGAGGGAATTAGTTACTGAATAGTGG
AATATTGGAGAGAAGGGGAGTGAGGCTGGAGTATCCTAGCATAACATTTTGTTAGTTATGGGTA
GGGGGCAGTAGCTCTCTAAAGGAGAAGAGCTCTAGGCAGTAGAGACCCTATTTTACAGAATTTT
CCTTAATCTGAATAATACATTCAGCATCTTGTTTTTCCATTCTTGCTATATTTTTTCATTTCTA
ATACTGTGGAACTCAGTTTGTATCACACATATAAAGTCTGTTTAATTCTCAGCCAAAAATATCT
GTTAGCCATCATAATAGAACATCTTGTATGCATATATTGATATATGATCAGGATATAAAGCCTC
TCATAAATAAATTATTTAATCACCAACCTGAGGTATTAACAATCTTCTGGGGATGAGCTCTTCA
TGGCGTCGAGCACAAAATTCCCAAGAGCATATCTGAAAAGGAAATAACAAACAAAATATCAACC
AACTATTTATTTGGATATAAAGACAATATCAACAATAATGTACACTGACTTTTAGTAAAAGCTA
AAGGTAATTACTCCTATTCACAACCTTCAGGTCTGGAGAGAAAACTATTCGAAGTTGACCATCA
CGAACAACACGAAGTTGCTCAAAAACGCTTTCTTGTATTGCTTTTGCATAATCTAGAACAATCT
GGCCAGAGGAATTATGATATTCCCGAGGCATGTCAACATAAAGTAGCTCTTCCAAAGTACCACT
TTCATATTTTATTTTGAAAAGCCTGGGAAGAACCTCAGCAGTTGCTTCTGAAAACACAAAAAAA
CTTCAGGAGGAAGATAGTGCAGCATAATCATATTTTTAAACATCTGACATTTTAAAAAATTCAT
AACACTAACAGTAAGATAATAACAGACCAAAACTAAACTGGACAGAGTAAAACTGATAAATTAC
AAAAAGAACTTACCAAACCCACGCCCAGGTTTGCAATTACATATTTCACAGTGCCATACATCCT
GAAAATATTTCAAAAGTCAATATGTTAGCGCCTTAAACTAATGCTTAGCTTCAGGAACTCAACA
TGGTTGCACCTTGATTCCCATAGAATTTCCAAGACAAACGTTGCTTGATACATAATAATATGGC
AATAACAACATCAAAATTAAGATGCTAACAAAGGAAAATGGTACAATGGAGAATACTACAGACA
TTATTGAATAATCAAGAGACTAACTTAGATGAAGTTATCCAGGCATCAGAAATAGTTTATAAGG
TTTTCTCTTGCAGCAGACCTGAGGGAAAACTCCAGTAGTTTGTCTGCCACTTCCATACATGGAA
ACACACCACTTCTTTTTGGCATTTGGAGCAAAATACTCAGCAACAAATTTCCTCCAGAATTCAA
TATTGTTATCCTGCATAAAATCAAGTGCAAATGCATCATCATAAGACAGAAGATATACATATTT
AGATTTTAGAAAAACACAACATCAAGAATAATTATTACTTCAGGTCTATGTTGCTGCTGATACA
TGTAATGTGTCAGCCGCCTAGCACACATCCCGGGTTCATATGCTGGTTTCACAGGAGACCTCAT
AGGCATATTTTGCTGTTGAAACTGCTGTGATAGCGGGGACCGTTGTTGAGGCATTGTCTTCAGG
AGTTGCTGCTGTTGCTGCTGATGTTGTTGATATTGCAAAAGTCTCTGCTGCTGCAAAAGATGAT
TCATCTGAGCAGCAGCAGCCTGAGAGGATTGCCTTGACATGTGGAGCAGTTGTTGCTGTTGTTG
TTGTTGATGCTGCTGCTGCTGCTGTTGTTGCTGATGCAAAAACTGCTGATCATTATGCTGGGGC
TCCAGTTTCACCGGTGCCATATTTCTCAATGTTTGAAGTTGTTGCGGTTCCAACTTCACCTGAG
CAAGATTCCTTGACGGCAACTGCTGCTGGTGCCCAAACTGATCATTGTTTACCTGCGACTCCAA
CTTCACCTGCCCAACACCACCCATCCCTCCTCGAATGGACTGAAAATGCTGCTGCTGCTGCTGC
TGAGCATTCAAAGGAGCAGAGAACTGTTGCATTGATGGCTGACTATGTTGTTGGAAATTCTGAG
GTTCAAGTTGCTGCGAATGCTGTTGATCTGGCAACATCTGACTACCAGAAGCATTTGAAAACTG
TTGACCCTGACCTTGACCAGATGAACCAGGGTTCATCAAATTTGATTGCAACTGATTGCCAAAA
TTCATTCCACTGCCAACACCAGATAGTGGATCCGCTTCCGCCCTAGCATCAATGCCTCCGCTGC
GCTGGCTGTTCCCAGGGCCACCATGCCCTGAATTTGGAATTCCATTCGGGAAAGACTGATTCAG
CAAGGAAGTCACATTAGACATATTCCCTAGCATATTCATGTTGTTAAACTGGTTTCGCTGCGCC
ACCAGCGAAGGGAACGAAGTTTGTGAAGGCACAGGGCCCCCTTGGCCCCCCAACATTCCCGAAT
TCGACCTCAAAAGAGACGGCGGCACAGGCTGGGCACCACCAATCGGCGTGGGTGGCCCAGGAGG
CACCATTCTTTCACTATCACTGCCCCTTTCACAAACCTAAGCCCAACAATAATAATAACCACAG
CCTAGTACACAAAACATGTCCACAAACAAACCCTCTAAATCTTAATCGACACAACGTTTCATTT
CAACCCAAAAAACTCCTCCACACCCTCGCTGTGCCTCCAAAACAAACCCAAACACTGAAATGTG
CACTCTTCAAACACCTTCCACATGAGTCT
Conservation Information
Conserved circRNAs NA
PMCS 0.024473738
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021a