Detail information of BGIOSGA032660_circ_ig.1


General Information
CircRNA Name BGIOSGA032660_circ_ig.1
ID in PlantcircBase osi_circ_008842
Alias Chr10:8243236_8244482(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 6063600-6064846  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA032660_circ_ig.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGAAATCCCACATTTTGCAATGTCGCGTGTAATTTATAAACAATATAGCATTTGCAAAAATAT
AGGATTTAACATGTTCGAAGGAGGAATTGAATAGGAccttgggaagcctatgtctattgcaagc
tgagatcaaacgaggctatgtttgtggactaaatttcagcataaagcaaattttgattcacagt
agtaagta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGGGAAGCCTATGTCTATTGCAAGCTGAGATCAAACGAGGCTATGTTTGTGGACTAAATTT
CAGCATAAAGCAAATTTTGATTCACAGTAGTAAGTAGTAATAGATTGCAACAAAATTTGTAAAG
CAATAAGTAAACAATAGTAGTAGTAACATAAGCATCATATTAATATCATCCTTGTGCCCTCCAT
GGCAACAAGTAACCATTTCACTTTCAGCCCACACCGAGCAAAGTCATCACCAATTTCCCACCAT
GCCAATTTCACAAAACATTTATTAAACCACCAACACTATACTTGTATCATTTCACCAAGTCGCT
CGTGACCGTGAGCACGGCTAATCAATTAGTTCGACACCCTGCAGAGGCTGTGCACTATACCCAC
ATGACATAAACTAGCAACCATGTAAACCATGTCACGCGATACCAAATGGTACCCGATTTGCTAG
CATATGACGAAGTTACTACATTACTCAAGCCTAACCTTGCATGAGCATGGCCAGTGTATACCCA
CACTAGGAGCAACCCTAGTGCCGCTAGTCCAGGGGGCCTTCGCTGGTACTAGCGTCGTGAAGTG
AACCATCCGTTCCCTCAACGAGGCACTTAACCGTTATATTGGATACGCTTAGACGCCTAGGCAT
AAACCGCACTAGGTAGCTCCTATAAACCATCATTCCGACTAGTCCATACTACTACGGCCTCCCA
ATGCAAGGTTAGACATTAAGCAACTTCATAACTAAGGTTACCCTATAAATAACACATGTGGTTG
CACTGTAAATCTTAGTTGGTGACACATAGCTCGGTCCTTAATCGACTCGGGCAAACACTCCCCC
TATCGGTATGCAACTACCACCATATGCACACCACTTGCCGCCCAAGTCTAAAATCATCACTTTT
CAGTTTTCAACTTCACAAATAACAGAGGCGACACCTCTGTCCAACATTTTCAAATAGCCCAAAT
TTTGAAGAGTGAATGATCCACCATTTGTAACATACGAAACTCTAAGCATGGCTAAGCAATAGCT
ATATTAGTAGTGCGAATATACCCAAATTGGTACTTGGACAGTACCACAGCCCATCCTAGATGTA
TCAACAGTAACATAATCAATAATCAAGGAGGATAAGTGCAGCAAATAGGAGTTGCTCTACCGAA
ATCCCACATTTTGCAATGTCGCGTGTAATTTATAAACAATATAGCATTTGCAAAAATATAGGAT
TTAACATGTTCGAAGGAGGAATTGAATAGGA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021