Detail information of Zm00001d023343_circ_g.1


General Information
CircRNA Name Zm00001d023343_circ_g.1
ID in PlantcircBase zma_circ_006028
Alias heat_test_circ_001655
Organism Zea mays
Position chr10: 3825499-3825689  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d023343
Parent gene annotation phospholipid transfer protein homolog1
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues seedling
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered Zm00001d023343_T002:1
Zm00001d023343_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTGAGGAGGGAGGTGCCTGCCGCTCTGCTAGCTCGTCGGGCTGTTTGGAATGCGGCGGTCGG
TAGATGGCAAGTGCTTTGCTAGAGCTAGCTGgctgatggccgcctccgaggtcgccgccgccgc
cagcagcaccaaggccaccacggccgccgtcgccactgccaacttctgcatgcgggccatgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGATGGCCGCCTCCGAGGTCGCCGCCGCCGCCAGCAGCACCAAGGCCACCACGGCCGCCGTC
GCCACTGCCAACTTCTGCATGCGGGCCATGTTCCTTGAGGAGGGAGGTGCCTGCCGCTCTGCTA
GCTCGTCGGGCTGTTTGGAATGCGGCGGTCGGTAGATGGCAAGTGCTTTGCTAGAGCTAGCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.279754232
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018