Detail information of AT2G35800_circ_g.4


General Information
CircRNA Name AT2G35800_circ_g.4
ID in PlantcircBase ath_circ_016700
Alias NA
Organism Arabidpsis thaliana
Position chr2: 15045964-15046381  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method circRNA_finder
Parent gene AT2G35800
Parent gene annotation Mitochondrial substrate carrier family protein
Parent gene strand +
Alternative splicing AT2G35800_circ_g.3
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G35800.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTTTGAAGGCTGATACCGAGGAGTCTATCTCATACGGACATTTCCGTAATTTCATGGTTTTG
CTGCCATATGAGCGCTTACAAGATGATCCTCGGTAAgaggttctttgaagaattagatagagat
ggtgatggcaaagtaactttggaggatctggaaattgcaatgaggagaagaaaattgcccagaa
gatacgcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGTTCTTTGAAGAATTAGATAGAGATGGTGATGGCAAAGTAACTTTGGAGGATCTGGAAATT
GCAATGAGGAGAAGAAAATTGCCCAGAAGATACGCCAAGGAATTTATGCGACGAGCTAGGAGTC
ATCTTTTCTCGAAATCGTTTGGTTGGAAGCAATTTTTGTCCTTGATGGAACAGAAGGAGCCAAC
CATCCTCCGTGCCTATACTTCTCTCTGCTTGACCAAGTCTGGTACTCTTAAGAAAAGTGAGATA
TTGGCATCACTAAATAACGCAGGACTTCCTGCTAATGAAGAAAATGCTATAGCCATGATGAGAT
TTTTGAAGGCTGATACCGAGGAGTCTATCTCATACGGACATTTCCGTAATTTCATGGTTTTGCT
GCCATATGAGCGCTTACAAGATGATCCTCGGTAA
Conservation Information
Conserved circRNAs NA
PMCS 0.519407777
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017