Detail information of Os11g0657050_circ_g.1


General Information
CircRNA Name Os11g0657050_circ_g.1
ID in PlantcircBase osa_circ_009902
Alias NA
Organism Oryza sativa
Position chr11: 26300615-26301667  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method PcircRNA_finder, circRNA_finder, find_circ
Parent gene Os11g0657000
Parent gene annotation Kelch repeat type 2 domain containing protein. (Os11t0657000-01)
Parent gene strand +
Alternative splicing Os11g0657050_circ_g.2
Support reads 2
Tissues pistil
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0657050-00:3
Os11t0657050-00:3
Os11t0657000-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCATCTGATACTTTTGATCTCAATGGCCGCGCATTTGAGAACTCCGAGAATTGGGCAGTGTTG
TCAACAGAAGGGGACAAGCCGATTCCTCGTTTTGATgagagaagagattgtgctagtagggttt
agtttagtcattcctgttttgggtaaattggatttgaagaggacgcaatgccgaagatgtttgg
tttctctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGAGAAGAGATTGTGCTAGTAGGGTTTAGTTTAGTCATTCCTGTTTTGGGTAAATTGGATTTG
AAGAGGACGCAATGCCGAAGATGTTTGGTTTCTCTCGTCGACGGATGAAGCTTGGAAGGTGAAA
CCTACTTCTTTCCTTCGATTTGGCCCAGAAATTTGGTCCCTTTTTTTTTATCTGCTCATATCCA
TTTGTGTTCTTCCTAAACCTGGCTAGGTATTGGTTTCTTTGGTTATTGTTCATAGTTTTTTTTT
TCCTTTTCGATAATGGTTTTTGTTCATGGGACATGGGTACAGAGCCATATCCTGCATTTGAGGA
GATGGCTCAGTTAGTTTTCCTGATTCGATTTATAAATTTGACCATTTAGATGATTTAATTCGTT
ATGTACGAAAGGGATTGAGCTTGTTATCTTAACAGAAGAGAGAGAGCATTTTTATTTGGTAAGT
TTTCGTTGGTAGATATGAGATTGAAATGTCTGGATTGAGAAAACTCGGTCTTTTTCCTTTTGCG
GAGTTGAAAAATACGTGGTTTTAAAACTGGCGAACTCCCCTGCAAATATCTGAGAGATTTTGGT
AAACCTAGCCTTACTCTGCATTTCTGCAGTGTTACATTTTGCTACTGTAGATAATAAGTCAGTT
TTTCCTAGTTATTCATCCTTCTGTTTCAATCACCTGTAAAAATGTTTTTATGATTTCTACAGGT
TGAAGGGTCATTTGCATGATCCTTTTCATGGCTCCCGGAGTCCTGCTCGGACAAAGCGGTCCAG
TCACCCCAATGTAAGCTTTTATGGCCTGAAAGAAATGTACATTTTGCCTTGTTTCTGGTTCTGT
TGTATTTTGAATTTTTGATGCAGTAGTATTTAAATGGTTATTAGTTTTCACGCTTTGTCCAGGG
AGAAGACCAAGTGACCACATCAGTGAGCGGCCGAGCTGACGACCTTGCTTGGCGCTGCTCATCT
GATACTTTTGATCTCAATGGCCGCGCATTTGAGAACTCCGAGAATTGGGCAGTGTTGTCAACAG
AAGGGGACAAGCCGATTCCTCGTTTTGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.11888126
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017