Detail information of BGIOSGA015093_circ_g.1


General Information
CircRNA Name BGIOSGA015093_circ_g.1
ID in PlantcircBase osi_circ_014358
Alias Chr04:21702658_21709189(MH63RS2), Chr04:21680480_21687013(ZS97RS2), Chr04:21702658_21709189(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 19195219-19198027  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA015093
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA015093-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTGGCGTCCATGAACTCGGCGAACTCGCCGCCGCCTTGCCGCAGAAGGGTGGTCTCGTCGGC
GTCCTCGATCCGACGGACTAGCTTGTCGTACTCACTcttatacccggaccaccaggcacgtctt
ctgttgtcccaaaaactgccctccatgtaccaattgtgattgcaacaatgttcaacattgtcag
cgccgtaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTATACCCGGACCACCAGGCACGTCTTCTGTTGTCCCAAAAACTGCCCTCCATGTACCAATTG
TGATTGCAACAATGTTCAACATTGTCAGCGCCGTAACGGGGATGAACACTGGTGATGCGTCAAA
GGTGAATCTCTCCGGGTCAACCTCATCGTTTTGGCCATTGCCATCCGATGTGCTCTTCTCCTTA
CGGGTGACCTCGAACACAGTCTCGGAGAGGCCTATGGTCTTGAGGAGCACAGTAAAAAATGCTA
GTAGCCATGCAGAGGCTGAAATGATCCGTTGCATTCTGTGGTTGTTCCACCAGGCACGTACAGA
GAGCCCACATTCCATGTACTCCACGAAGTTGTATGTATTATAGGTCAAGAATAGTGCTAATGTG
ATGTTGAAACAATTTTCTGATGCCTATAGGAACAAGATATTACTGCATCACTTCTCTGCTCCCA
ACCAATTGGAAGTACTAAAAGAATTGTTCATGAATATGTAAAAGTTCTACAAATATTTGTACTA
CAAAAACTAATTAATACTTACAATTATATAAGCAATGTAAAGATAAGTATGGAGAGAGTACCTT
TGACAAGAAGGATTGATTTGTGAGTAGGCAATAAGGAACCAACAATTCATAGCATAGCTCAACA
AATCCCCTCACAGCCCACACATAAAGAGTCAGGTACGCAAGGCATTGTCGGAATTGGAGATGCT
TGAATATGCTCAGAAGGAGTGGGTTATTCTGGCTTATGAGTATCTCAAACAAACCCGTTGCCCA
TCTCTTGAACTGGGTTAGGCAAGCTGGTCCACCCGTTGGTGCGCAGCCCAAGAATGCTGGTGGT
TCGGTTTCCAACTTTGCAGATCTCCAACCTGCTGCATGGATCCGCTGCCCAGTCAAAATGTCTT
CGGTCATTGATCCATAGGCCCAACCAACCTGTAGATATATGGAATGACTTGCTATGAAGCTTGT
TTAAAAGTGTAGTGCATTGTAGCATAACCTACAAAAATATGACAAATGAAAGTTGTCTATACCT
CCAGACCCCAATGTGTGCCACTCTCATAGTTGCAGGAAGAAACTTCTTTTGCAACCTCAATGTG
ACTTGATATATCTACTATTGGCTCACCGGACATATCCCCAGAAATGATGTACCGAGCTGATTCC
TTCAACTCCTCTGAACTTTCAAACTTGAACTGAAGCTCCTTGTAAGATGGCGAACCTAGAGAAG
CAAATTGAAAAGTCTCGCGATTTAGTTCTACTAGAATGATAAGACTAATGTTCTCCTGATAAGT
GATAACCATCACATCACTGTGTATGCTCCAACTTCACCTGCGGCGCCCTCTCTTCCTACCACAA
TGGAGTCTGGTTCGATGCCGTAAATGGCTTTTCTACAGTGGAAGCAACCCGTTCCACCATAAAA
TAAGCCCTAAATCCCTGCAACCCCGCCTAGAAGTTTCTGAACACACGTACTGCAAAATTAGTCT
AGTTTTTTTTCTATAGATAGAAATCTAGCATCTATATTCAGAAGTGGATATATAGTGTAGTTTT
AATTGTTACTTTCAATTGGGTTACACAAAGATGTACTTTCAAACTTTCACTATAAGAATGGATA
AGTGTTATCATTAATTAGTACTCCCTCCGTTTATTCACAATGTAAGTCATTCTAGCATTTTCCA
CATTCATATTTATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAAACATCAATAT
GAATGTGGAAAATGCTAAAATGACTTACATTGTGAAACGGAGGAAGTACTTCATATGTTTCATA
TGACAAGTCGCTTTGACTTTTTTAGTAAAATATTTTTAAGTTTAATCAAATTTATAGAAAAAAT
ATAGTAATACTTTTTAAGGCAAACAAACATATTTGTAAAATATATTCAATGTTATATATAATGA
AATGAATTTAGTGTAATTTGATGTTATAGATATTGTTAATTTTTTTTCTAGCTATAAATTTGGT
CAAAACTAAAGAAGATTGATGAGGAAAAAAAATCAAAGCAGTTTATAATATGAAACGGAGGGAG
GAATACACTGGTAGATGTATTATAACGGACAACCACTTGTGTACGCACGTACCTTGTAAATAAC
CTCCAGCTTGTTCCCGAAAGGATCGTCCTTGAGGTCGCCGTAGAAACTCTGCGGCACCTGAACG
AACCCGCTGGAGATCTCGTCGTCGAACCCCAGCAGCAGGCACATCGCGTGGAGGACGACCTGGG
GATCGTTCGCGAACATGTCGCAGTCCACGTTCAGCATGATCGGTGCGTTGGTCATCACGGCTGA
CACCCTCGTCTGCACACACAAGAGAGAGAAATGTACACATGTTTTCAGTACTAACGCACATCTC
TGGGCTCGATCTGAATCTGACTCCCATTACATGTCGATCGAGCTAACAGTAGATATCAGTGCAC
TGATCGAGCTAGTACCAGGGCGTTCATGGCGCCGGCCTTGTAGTGATGGTGGTGTCCGGGGCTC
TTCTCCCTTGAGACGTATATGAGATGCGGGAACCCTCCTTCTTCGCCTATCCTGTTCTTGCTGT
TATTATCCCATATAACCTGATGATGATCTCCCCGATATGAGAAGTTCATGTCATGAGAGACAAG
AAAGATTTGATGTAGTTCTGACATGATCAGTTTGAAAGCTAGCCATGTGGGGAATCGACCTTGA
CAATGGCGCGGTGGTTCGTCCTCTTGGCGTCCATGAACTCGGCGAACTCGCCGCCGCCTTGCCG
CAGAAGGGTGGTCTCGTCGGCGTCCTCGATCCGACGGACTAGCTTGTCGTACTCACT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021