Detail information of BGIOSGA030689_circ_ag.1


General Information
CircRNA Name BGIOSGA030689_circ_ag.1
ID in PlantcircBase osi_circ_018455
Alias Chr11:5296082_5300782(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr9: 11793845-11798545  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TA-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACTCATTCAGTGGTTTGAGTCTGCTGAAAACTGTGCACTAATTTGCATTCTTCAACACTCAC
CATTTCTAGAGAAGCTCACTCTTCAGCTTTCTAAGGaaatcagtaatcaatgttcgatcaagag
cgatctacaattcgatggaaaagccatttacatcagaaaaccttaagacagttgaagttaaatg
tcaagata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAATCAGTAATCAATGTTCGATCAAGAGCGATCTACAATTCGATGGAAAAGCCATTTACATCAG
AAAACCTTAAGACAGTTGAAGTTAAATGTCAAGATATTGACCAGAGAGTTCACAAACTTATGAA
GTCCTTGAACAGCTATGGAATACCGCTCGAGAGAATTAATATCCAACAAACAAATCAATTTTCT
TAGTGTAAGTTTTCTATTGACAATCTGTATTCCTACACTTTTCTTTTACATCTTTGAAAAATAA
ACCAGAGAAACTCCTTAACAGTAGAAAAATATTTTTATAAAAGCTGTGCACATTCATGTTCGGT
GTGAAATGAAAAGTGGGAGAGTCCCCAGTCCTCACAGTTGGTGAGAAAATTTGTACATTTTATT
ATTCCATAGTGAAGTAATGGCAAGTATAGATTTAATTGAGGTATAAGATGTATTAAAGTTAATA
AACCCCAATTATGTTGAATTGAAATTCAGAGATTCTACAAGTAACTAGTATTATTTCATTGTGC
ACCTGGCTACAGCTATCAGTGCTACTACCAAGACTGTTGGCACACAAACCTCTTTTGCTGTTTA
ATGGATTAGGCAGCACTCCTGCATTTTCCTTCAAAAACTAAATATTTCGTATCCAACTTTACCT
GGGGTTTCATTCGTATTATGAAGGACCAAACACAAATTAATGGAATGCCATCAAATATGGTTCA
TGAACCTTACCCTGCTATGCACAAACGATTTTTTTGTTCTTTTATTTACATTTTTTTAAAGAAG
TGAAGAAAATATCATATGAATTAGAAGAAGGGACCGAATCTCATATTAGTTGAAGTGATTAAGT
GAATGAGTTATACTGTATGCACGTAATTGGCAGTATTACCGTCAGATGGGCAATAAGCATTTAT
CTCGAATTGCACTATTACAGTAATCACAAATCTGACCGTCACATTTTATGTTCAGTTGATCTGA
GTCCCTGACCTGCAAATCGTATAACTATGGGCATCATTTTATTGTTGTTGACTGACATTATATT
ATTGTAAATGTCTGTTACTTTTTAGTCCTGGACCATTCTATATGAGTTAATTTTGTTTGAATTT
GCTGCCAGCATGATCTATTCCGTACAAACGTATCAAGGTCTGATTCTCTAGTGGATCTGTGCTT
CCTCTTATTTGTTCTTCTACCGTTCTTCAACTATTATCATGTACTCCGTTCGAATTTAAATATA
TACACTGTTGATTTTAGTTGTTCAACCTTTCGAAACTTTGAACAGTAATAGCCATGTGTAAATT
TTTAGTTTGAAAACATAAAAACCATGTGTAAATTTTTCTTTACAAGTACTTCTATAATATTATA
ATTTTGTTAGATATTATCATCGTGTTTTTTTTTTTTTGCGGGGAGATATTATCATCATGTCAAA
TAGTGAACAAAGTTGCATAACTAAGAAAGACCGAATAAAGTCAACAATGTCAGGTAGTGTACAG
ATCCTGATAAAAAAAAGGTAGTGTACGGACTTACAGGTATTTCTTGTGTTGTTATTGTAAGGTG
AACTATTTTGCCTTTGTTTTAATGTTGACACTTCTGTTTTTCATTTTCAAGGAAGGACCTCTCT
GAATCTCTTGCACGCATTTTTCTTTTTTTTCCCTACAGGTTTTAATTTCGTTTGGACAGGATTC
ATACCAAGACAGAGTTGCGGAAGACCCGGGCTGTCGATGTATCTAAATTCTCCTTAATTTGCCA
TTTGGTATTGCTGCTTCAAACCAATGGGGATATTCTTAAATCGGTTCCAACTGAGGGAATGAAA
CATAGGTTTATTGATACGATTTGCTTGGATGTGTCTGGACGTGGTTTTATTAGCTACCTACTAG
GTATTAGTCTTACTCACATGTTTCGTTAACGGCCTGACTTGGTAGTATCTTTCGTGATGACTGA
AGCTGGATCAGCTACTGAACTGGAACTGAATGTTCATGCGATTTATAAATTTGCGATGCCCTAG
GACAGTTTCATGCTTTCCTTTGTATATTTTGAGGAGATTTGATCAAATTTCAGTTTAGAGTGAA
TTACGCTTTGGGCCAATTTTATTATCTAAGTTTCACTTTGGACCACCCTTAGATATATCTTTTC
ACTTTAGACCGGATAAATTTACCATTGTTGCGATTTGGACCACCACGAACGATTTTTTTTCTCG
TGCAATCAACGACCTTAAACACATCAGCTCTAGTATACGGCCGATCTCCTCTATATATGGTTCA
TATGTTTGCTGAAAGAGAAGTTAGACATGACGAGAAAAGTTGTTCATGGTAGTCCAAACCGTAA
CAATGGTAAATTTACCCGGTCCAAATTGAAAAGATAGGTTTAAGGGTGGTCCAAATTGAAACTT
GGGCAATAAAAGATGAACCAAAGTGCAATTTACTCTTCAGTTTATTTTGGACCGACGCACAAGC
TGGATTACTACTGCGGAATTTGGAAAAAAAAAGAACTACTTTGTAAAGCAGGTATAATACCAAG
CAAGAATCAGGCAGGTATCGGATTATGAAATCTATCGGTATATACATATTTAGCAGTACTTGGA
AAAATTATGGTCTTTTATTGGGCGTAACTCTGTTTTGTTCATCTGGTGGAGTTAGCGAGAAATT
AGTTTTGTATATAACAGTTTTGGGCAGAGCGCCCTACATCTAAAAAATTTTTAACTAAGAAAAA
ATCAAACGACTTATAATATGAAACGAATAAAATTATATGGGACGAACAAAGTATTTGTAAATTA
TAGTTGCGGTCATATCGATAGTTTAAGGTCCCAAACGGCATATTTAAAAAAAATAATTTATGAG
TAAAACTTTTATATACGTGTTTTATAGCAATCTAAAAGAAAAGGCTGAAAAATAAATTTCGATG
AAAAAACTTTAAAATCAACTTCAAATTTAATTAAGATTGTAAATTTAAATTTTAACTGATAGGT
ATAAGTATATATTTTGTAGCTTTCTAAAATTTACTCTGCTTTTTTCTCCATTTTTTTACACTTC
CTCCTCCGACGAGTGATGATCATGCCTATCTAGGTTCCTCCACCGCGTGCGCCGCCGCCCGCCG
GCCCGCGGCTCGCCGACGGTGCTCAACCGCCGTGTCTCGCCGATCTCTTTCACTGCGAGCGCGA
GCGTGTGCGTGCGCTGCGTGTGCGTCGGTGAGATTGCTGAGGTCTCGTCCCGCAGGTTTCGTTC
TTGCTCTGACCGCCTGACGCGCGCAGAGTGTTCGACGGAATGTCTCCCGAGAGCAAGAAGGCGG
CGGTGGAGGGCGGCGGCGGCGGGGACCACATCGGCGCGCTCCCGGACGCGCTCCTGCATCACGT
GCTGTCGTTCCTGCAGTCGAAGGAGGTGGTGCGCACGTGCGTGCTCGCCCGGCGCTGGCGCCAC
CTCTGGAAGTCCGTGCCCGTCCTGCGCGTCACCGGCGCCGACGAGGCGATCCACAAGTTCATGG
ACCATCTCCTGCTCCTCCGAGAGCGATCGCCCCTGGAAGCTTGCGTGTTCGCCTTCTGTTTATA
CTCCAAGCACGACGCGCCATTCGCGAACCTCTGGATTCGGTATGTGATCTTGTCGTGCCAAGTT
CGGGTGCTCACTCTTGATATCATTGGGCTTCGGCTCATCGATCTGCCTGTAGTCTCTGGATTCT
TGACTACGTTGGAGCTTGGTGGTATGAGTGTTCATGGCAAGTTTCTTGATTTCTCGAGCTGTCC
GGCACTGGAAGAGCTGAAGATGACCAAATGCACCATATCTGCTGACAAAATCTCTTCCCAATCA
CTCAAGCGTCTGAGCATCTGTGAATGCAAGTTCAAGTCAGACGGGAGGACAGTTATCTCTGTAC
CAAGTCTCCTTTTCCTGCAACTAATAGCTTTCAAGGGTAGAACTCCTTTCCTTGAAGATATGCC
ACTGTTGGTAACAGCAAAAGTTATACTGTCTGGCTACCACTGTACGGATTATTGTTACAGCAGT
GACCCTGGGTATTGTCCTATTGGTTGTACGCATTGTTATGGCATTGATGATGGTAGTGCAGGCT
GTGTGCTTCTGAAAGGTTTGGCTGATGCTTCGAATTTGGAGTTGATAGCTGATCCTAAAGTGGT
ACGCTTACTACTACTACTCTATTTTATCAGTAAATATTTAAATGCTTACATTTAATAAGTTGCA
TATGTCAAATTAGTTTGAGCTTTAAATTCCAAGTGTCACTTTGGACAGTCCATATATACCATAA
AAATATGAAGTTTCTGTATATGATCATTCAGTGTATACTAGCATGCTGTATATTCAAAATATTT
TGACAAAGGTTACTGATTGTTGTTAATTCTCTCACGACTTCATGCAATATCTGTAGTCTATGAG
TTAATCTGTAAATTAAAGAAATTTGTACAATATGGCATGGGCTGTATGTAATTGTTTGGTACGT
TGTTTAGCTGAGTATCTATAATTCATATCTACTATAACTAAGTGCCAAAAACTTCTAACCGTTT
CATTATGTTACAACTTTACTTCAAAATTAACCTTGAGTTGATGTTGCTTTAAAAAACTGTCCAG
TTTATTCTCAGAAGGGATTTGAGATGGTGCCCCACATTTACCAAACTGAAGACTTTATTACTCA
TTCAGTGGTTTGAGTCTGCTGAAAACTGTGCACTAATTTGCATTCTTCAACACTCACCATTTCT
AGAGAAGCTCACTCTTCAGCTTTCTAAGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021