Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os07g0438800_circ_g.2 |
ID in PlantcircBase | osa_circ_033613 |
Alias | NA |
Organism | Oryza sativa |
Position | chr7: 14756392-14757768 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | Os07g0438800 |
Parent gene annotation |
MYB-CC family protein, Pi-starvation signaling (Os07t0438800-01) ;Similar to Phosphate starvation response regulator-like protein . (Os07t0438800-02) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 32 |
Tissues | root, seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os07t0438800-01:5 Os07t0438800-02:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_007147* |
PMCS | 0.160711638 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
14756534-14757765(+) 14757756-14756533(+) 14756457-14757712(-) |
Potential amino acid sequence |
MRWTPELHERFVDAVNLLGGSEKATPKGVLKLMKADNLTIYHVKSHLQKYRTARYRPELSEGSS EKKAASKEDIPSIDLKGGNFDLTEALRLQLELQKRLHEQLEVGPAAQSSVAVHQSAAQQSVSSQ SGEPSAVAIPSPSGASNTSNSKTRMRWTPELHERFVDAVNLLGGSEKATPKGVLKLMKADNLTI YHVKSHLQKYRTARYRPELSEGSSEKKAASKEDIPSIDLKGGNFDLTEALRLQLELQKRLHEQL EVGPAAQSSVAVHQSAAQQSVSSQSGEPSAVAIPSPSGASNTSNSKTRMRWTPELHERFVDAVN LLGGSEKATPKGVLKLMKADNLTIYHVKSHLQKYRTARYRPELSEGSSEKKAASKEDIPSIDLK GGNFDLTEALRLQLELQKRLHEQLEVGPAAQSSVAVHQSAAQQSVSSQSGEPSAVAIPSPSGAS NTSNSKTRMRWTPELHERFVDAVNLLGGSEKATPKGVLKLMKADNLTIYHVKSHLQKYRTARYR PELSEGSSEKKAASKEDIPSIDLKGGNFDLTEALRLQLELQKRLHEQLE(+) MNSLRLDQLRNHLSQFTNQLPNNQFHLNQENLLQLLYPRPLVPPIPPTPRHE*(+) MKLIVGQLIGELRQMIAQLVQPQAVHEASFGVLTGDAMPQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |