Detail information of Os07g0438800_circ_g.2


General Information
CircRNA Name Os07g0438800_circ_g.2
ID in PlantcircBase osa_circ_033613
Alias NA
Organism Oryza sativa
Position chr7: 14756392-14757768  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os07g0438800
Parent gene annotation MYB-CC family protein, Pi-starvation signaling (Os07t0438800-01)
;Similar to Phosphate starvation response regulator-like protein
. (Os07t0438800-02)
Parent gene strand +
Alternative splicing NA
Support reads 32
Tissues root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os07t0438800-01:5
Os07t0438800-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGAGTGTTCATTCTTGTATTCTGTTGCAGGAACTTTGATCTCACTGAGGCATTGCGTCTCCAG
TTAGAACTCCAAAAGAGGCTTCATGAACAGCTTGAGgttggaccagctgcgcaatcatctgtcg
cagttcaccaatcagctgcccaacaatcagtttcatctcaatcaggagaaccttctgcagttgc
tataccct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAACAATCAGTTTCAT
CTCAATCAGGAGAACCTTCTGCAGTTGCTATACCCTCGCCCTCTGGTGCCTCCAATACCTCCAA
CTCCAAGACACGAATGAGATGGACTCCTGAACTTCATGAGCGCTTTGTAGATGCTGTCAATCTA
CTTGGTGGCAGTGAAAGTGTGTATTGCTTTAAGAAATGTTACATCTCCTATGATTGAACTAATT
ATGCATATTGACATTTATTGTGAATTGTTGCAGAAGCTACTCCCAAGGGTGTGTTAAAGCTAAT
GAAGGCAGACAATTTGACCATTTATCATGTTAAAAGTCACCTTCAGGTCTGTTAGTTGTCCCTA
TTGCATGATATTTTTGTGAAAAAAAATTATTCTTATCTTTTCATTTTGAGTTAATTTATTTTGC
AGAAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAGGTCTGCCACGTTCCACTTTTTC
TGTGTTTTGCTGCATTCTTTTATTTATTTATTTTGTTGCCATGTATTATTTATTTTATTGCCAT
GTTCATCAATTTGAGATTTTTCAGGTTCTTCAGAAAAGAAGGCAGCCTCAAAAGAGGACATACC
ATCAATAGATCTGAAAGGAGGGTAAGTTTGAAATCTTCATGACTTCATTATGCTTCTACCTTGC
GATCTCACTGCTGTGTTCTCTTTTATTCATTTGGAATCCTGTATTCAATCATATTATTAGCAAA
ACTGGTTCAGTGAAAGATTCTCCATTAAAAGGGGCTTTCTTGGTATAACAAAAGGAATAATTTG
TTGATCAAATGCTTAAGATATTTTGTTGATCAGCAAACTGTTTTTTTGTAATAGGACAACAATA
CTCGTTACAGCACTGTGTTCTATATTGAAGTGGCTTGGAAACAATTCTTTATTACCAATAGATA
TTCTTATTCAAACTCGTTGACTCTCCTTGGTCTCCTTGGAACTTTCTCCTTTTGTATTTTCTGT
TATTTATTTGTATCAAATGCAATTGTGTCTAGTGAACAGAAAGCAGTGATCTTCCACAATAAAA
AAAAAATCTATCTGGTCTTTGTCTGGTCTAATGTTAGTCCTTCATTCTTGCTTGTATTTTGCCT
ACTAATCTGATCGCAAATATGGAATGTCCTGCTGTTTTTAGCCAACTTGTACCGCAAATATGCA
ATGGCCTGCTGTTTTAGCCAACTTGTTTGGGCATCCTTAACATTAGACCATCTTGTGAGGTCCG
AGTGTTCATTCTTGTATTCTGTTGCAGGAACTTTGATCTCACTGAGGCATTGCGTCTCCAGTTA
GAACTCCAAAAGAGGCTTCATGAACAGCTTGAG
Conservation Information
Conserved circRNAs osi_circ_007147*
PMCS 0.160711638
Functional Information
Coding potential Y
Potential coding position 14756534-14757765(+)
14757756-14756533(+)
14756457-14757712(-)
Potential amino acid sequence MRWTPELHERFVDAVNLLGGSEKATPKGVLKLMKADNLTIYHVKSHLQKYRTARYRPELSEGSS
EKKAASKEDIPSIDLKGGNFDLTEALRLQLELQKRLHEQLEVGPAAQSSVAVHQSAAQQSVSSQ
SGEPSAVAIPSPSGASNTSNSKTRMRWTPELHERFVDAVNLLGGSEKATPKGVLKLMKADNLTI
YHVKSHLQKYRTARYRPELSEGSSEKKAASKEDIPSIDLKGGNFDLTEALRLQLELQKRLHEQL
EVGPAAQSSVAVHQSAAQQSVSSQSGEPSAVAIPSPSGASNTSNSKTRMRWTPELHERFVDAVN
LLGGSEKATPKGVLKLMKADNLTIYHVKSHLQKYRTARYRPELSEGSSEKKAASKEDIPSIDLK
GGNFDLTEALRLQLELQKRLHEQLEVGPAAQSSVAVHQSAAQQSVSSQSGEPSAVAIPSPSGAS
NTSNSKTRMRWTPELHERFVDAVNLLGGSEKATPKGVLKLMKADNLTIYHVKSHLQKYRTARYR
PELSEGSSEKKAASKEDIPSIDLKGGNFDLTEALRLQLELQKRLHEQLE(+)
MNSLRLDQLRNHLSQFTNQLPNNQFHLNQENLLQLLYPRPLVPPIPPTPRHE*(+)
MKLIVGQLIGELRQMIAQLVQPQAVHEASFGVLTGDAMPQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017