Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0720700_circ_g.1 |
ID in PlantcircBase | osa_circ_016318 |
Alias | NA |
Organism | Oryza sativa |
Position | chr2: 29900498-29903146 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os02g0720700 |
Parent gene annotation |
Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isof orm 2. (Os02t0720700-01) |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os02t0720700-01:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.177084466 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
29903016-29900500(-) 29900540-29903073(-) |
Potential amino acid sequence |
MMHGLLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTLGTGCSLGPEGPSVDIGKSCANG CSEMMENNRERRIALVAAGAAAGIASGFNAAVAGCFFAIETVLRPLKAENSPPFTTAMIILASV ISSTVSNVLLGERPAFIVPAYELKSAAELPLYLILGMLCGAVSVVFGRLVVWFSNFFGYLKERY DFPIVVYPALGGLGAGLIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVATAL CKGSGLVGGLYAPSLMIGAAVGAVFGGSAGYLINSAVPGNAAVAQPQAYALVGMAATLASVCSV PLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVVNQSKDGEPSRFRTPRRGYSSLSSEDRNSK SWRRGDSVNDLELTSLRTDNYDTYNEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDKQQ NCGLVVDCEDFLEGIVTLGDIRRMGFELHGDSFTSGDQLKPAVHVIHEWAWAGTPNEGAAWLRL QRLADTWHRILLIPVTGGVVVGMMHGLLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTL GTGCSLGPEGPSVDIGKSCANGCSEMMENNRERRIALVAAGAAAGIASGFNAAVAGCFFAIETV LRPLKAENSPPFTTAMIILASVISSTVSNVLLGERPAFIVPAYELKSAAELPLYLILGMLCGAV SVVFGRLVVWFSNFFGYLKERYDFPIVVYPALGGLGAGLIALKYPGILYWGFTNVEEILHTGKS ASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAGYLINSAVPGNAA VAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVVNQSKDGE PSRFRTPRRGYSSLSSEDRNSKSWRRGDSVNDLELTSLRTDNYDTYNEEMLLDDLKVSQAMSKS YVKIPTSAMVTEALKLLHDKQQNCGLVVDCEDFLEGIVTLGDIRRMGFELHGDSFTSGDQLKPA VHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVVVGMMHGLLEIFDQLKLVKPPQK QGINFLAAIFPTVNAVQAAVTLGTGCSLGPEGPSVDIGKSCANGCSEMMENNRERRIALVAAGA AAGIASGFNAAVAGCFFAIETVLRPLKAENSPPFTTAMIILASVISSTVSNVLLGERPAFIVPA YELKSAAELPLYLILGMLCGAVSVVFGRLVVWFSNFFGYLKERYDFPIVVYPALGGLGAGLIAL KYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAA VGAVFGGSAGYLINSAVPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLP LMGAVGLAIWVPSVVNQSKDGEPSRFRTPRRGYSSLSSEDRNSKSWRRGDSVNDLELTSLRTDN YDTYNEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDKQQNCGLVVDCEDFLEGIVTLGD IRRMGFELHGDSFTSGDQLKPAVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVV VGMMHGLLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTLGTGCSLGPEGPSVDIGKSCA NGCSEMMENNRERRIALVAAGAAAGIASGFNAAVAGCFFAIETVLRPLKAENSPPFTTAMIILA SVISSTVSNVLLGERPAFIVPAYELKSAAELPLYLILGMLCGAVSVVFGRLVVWFSNFFGYLKE RYDFPIVVYPALGGLGAGLIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVAT ALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAGYLINSAVPGNAAVAQPQAYALVGMAATLASVC SVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVVNQSKDGEPSRFRTPRRGYSSLSSEDRN SKSWRRGDSVNDLELTSLRTDNYDTYNEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDK QQNCGLVVDCEDFLEGIVTLGDIRRMGFELHGDSFTSGDQLKPA(-) MGTVSQVETSSSPLFMSSMNGLGQVPQMKVQLGSAFRG*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |