Detail information of Os02g0720700_circ_g.1


General Information
CircRNA Name Os02g0720700_circ_g.1
ID in PlantcircBase osa_circ_016318
Alias NA
Organism Oryza sativa
Position chr2: 29900498-29903146  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0720700
Parent gene annotation Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isof
orm 2. (Os02t0720700-01)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0720700-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGTATTCTGTGCCAAGTATCAGCTAGCCTCTGAAGGCGGAGCCAAGCTGCACCTTCATTTGG
GGTACCTGCCCAAGCCCATTCATGGATGACATGAACagcgggcttgagctggtctccacttgtg
aaactgtccccatgtaattcaaatcccatacggcgaatatcccctaatgtaacaattccttcga
gaaaatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGCGGGCTTGAGCTGGTCTCCACTTGTGAAACTGTCCCCATGTAATTCAAATCCCATACGGCGA
ATATCCCCTAATGTAACAATTCCTTCGAGAAAATCTTCACAATCCACAACAAGGCCGCAATTTT
GCTGCTTATCATGCAAAAGCTTGAGAGCTTCTGTCACCATGGCAGATGTTGGAATTTTAACATA
GCTCTTTGACATGGCCTGGGAGACCTGGTAAAAGAGTTCAAATGACAAATTAGGATAGAATTAA
CATAATAACATGTACTTCTATTGAAAATTGAACGCACCATTGCATCAGCTAGACCGTTAACAAT
AAGAATTAGAGGCCTACAAACCTTCAAATCATCTAGAAGCATTTCCTCATTATAGGTGTCATAG
TTATCAGTCCGTAAGCTAGTGAGCTCAAGATCATTTACACTGTCACCTCGCCTCCAGCTTTTAC
TATTTCTATCTTCTGAAGAAAGTGAAGAATAACCACGCCTGGGTGTTCTAAACCTAGATGGTTC
ACCATCCTTTGATTGGTTTACTACAGAAGGAACCCAGATTGCTAACCCAACTGCTCCCTGTTGG
ACAATAAAAAATAAGTGCATTAGTTTTGATAATGCAATAGTGAAACATAAAATCACAACATTTA
TGTCCTCTTCTAGACATCATGATGTGACAAAAGAGAAAGACTATATCAAAACAAAACAATGGGC
ACACTACATAAACAGTCATACTTACCATGAGAGGAAGCAAAATCCTGTAGTCCTTTGTCAGTTC
AAAGAGAAGCAGCACTGAGGTCAGTGGGACTGAACAGACTGAAGCTAGTGTAGCAGCCATTCCA
ACCTGGAGTTCTGACAATTAGTTTTTGTATATACAAGGATGTAGAAATAACAGTATTGCTTCAA
GCAATATGAAAAAAAAAAAGGAAAACAGAGCAACTTACTAGAGCATAAGCTTGTGGCTGTGCAA
CAGCAGCATTACCAGGTACAGCAGAATTTATCAAATATCCAGCTGACCCTCCAAAAACAGCTCC
AACAGCAGCCCCAATCATTAGGCTTGGTGCATATAGCCCACCCACAAGGCCAGATCCCTTGCAA
AGGGCAGTTGCAACTACCTTTGCAGCTGCAAGCTGAGTTAACAACCATATACCAGGAGCAGAAG
CACTTTTCCCAGTATGTAGTATTTCTTCAACATTTGTGAAACCCCAGTATAGAATGCCAGGATA
TTTGAGAGCTATGAGGCCAGCTCCCAGTCCACCCAAAGCAGGGTATACTACAATAGGAAAATCG
TATCTTTCTTTTAAGTATCCAAAAAAATTCGAAAACCATACAACCAACCGGCCAAATACCACAC
TGACCGCTCCACAAAGCATTCCTAAGATGAGATATAAAGGTAGCTCTGCAGAACAGAAAATGAG
ACGACAGAATATCCTTTAGAACCTATGCTGTTCATATACAACAATACAAAAGGAGAGAATTATT
CAACCAAGAAGCCATGTCAAGATAATAGAAAAGTTGGGTTTGTGTGAATAACTTATAAAAGTAG
GGCAAGTGCTGCTAAACTTTATGATAACATCATCTCTGAAACATATTACTATAGGCCTCAACAA
AATGGAGATAGCATATTAGGGCTTGATGAACCAAGAATTGGTAGTGGTGCAAGTGGTGTATCAT
AACATGATAAAAATTGGTAGTGTTTGTTACTGTAGTTAATAGATGAATCTTCAATCTTAAAGAT
AAAGGTAAAAAGAATCAGGGGAGATACCGGCAGCAGATTTTAGCTCATACGCTGGCACTATAAA
AGCTGGCCTTTCTCCAAGCAGAACATTTGACACAGTAGATGATATAACAGAAGCCAATATTATC
ATTGCAGTTGTAAAAGGAGGTGAATTTTCTGCTTTCAGTGGCCTCAGTACAGTTTCAATGGCAA
AGAAACACCCAGCAACTGCTGCATTGAAGCCTGAAAACACACAACACAAGAAACAGTATATTAG
CAAGCGCTAACAACAAAAAGGCCAAAAGGGTAGGAACAAAATCAAAATGTTAAATTTTAGAGTT
ACATGGGAGTCGTGAAATACAATATTTCAAGTTATTTTACAAAGATATCCGAAACAATACATGT
TAACTATAAATGCTATCCAATTTACATGGAATTGCCATTACGTAATACATCCTTAAATAATAAT
TGTAAGGTGCTAGCTATCGAAGTCATGATATTCTACTAAGGAAACAGGTACGTAATCATCAATG
ACATACCTGAAGCAATTCCAGCAGCAGCACCAGCAGCTACAAGAGCAATCCGCCTCTCCCTGTT
ATTCTCCATCATTTCCGAGCACCCATTTGCACATGATTTGCCAATATCCACACTAGGACCTTCA
GGCCCCAGTGAGCAACCAGTACCTAGAGTTACAGCAGCCTGGACAGCATTTACAGTTGGAAAGA
TTGCCGCAAGGAAATTGATTCCTTGTTTCTGAGGCGGTTTCACGAGTTTGAGCTGATCAAATAT
CTCAAGCAACCCATGCATCATTCCTACAACAACGCCTCCTGTCACAGGGATCAGCAGTATTCTG
TGCCAAGTATCAGCTAGCCTCTGAAGGCGGAGCCAAGCTGCACCTTCATTTGGGGTACCTGCCC
AAGCCCATTCATGGATGACATGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.177084466
Functional Information
Coding potential Y
Potential coding position 29903016-29900500(-)
29900540-29903073(-)
Potential amino acid sequence MMHGLLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTLGTGCSLGPEGPSVDIGKSCANG
CSEMMENNRERRIALVAAGAAAGIASGFNAAVAGCFFAIETVLRPLKAENSPPFTTAMIILASV
ISSTVSNVLLGERPAFIVPAYELKSAAELPLYLILGMLCGAVSVVFGRLVVWFSNFFGYLKERY
DFPIVVYPALGGLGAGLIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVATAL
CKGSGLVGGLYAPSLMIGAAVGAVFGGSAGYLINSAVPGNAAVAQPQAYALVGMAATLASVCSV
PLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVVNQSKDGEPSRFRTPRRGYSSLSSEDRNSK
SWRRGDSVNDLELTSLRTDNYDTYNEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDKQQ
NCGLVVDCEDFLEGIVTLGDIRRMGFELHGDSFTSGDQLKPAVHVIHEWAWAGTPNEGAAWLRL
QRLADTWHRILLIPVTGGVVVGMMHGLLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTL
GTGCSLGPEGPSVDIGKSCANGCSEMMENNRERRIALVAAGAAAGIASGFNAAVAGCFFAIETV
LRPLKAENSPPFTTAMIILASVISSTVSNVLLGERPAFIVPAYELKSAAELPLYLILGMLCGAV
SVVFGRLVVWFSNFFGYLKERYDFPIVVYPALGGLGAGLIALKYPGILYWGFTNVEEILHTGKS
ASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAGYLINSAVPGNAA
VAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVVNQSKDGE
PSRFRTPRRGYSSLSSEDRNSKSWRRGDSVNDLELTSLRTDNYDTYNEEMLLDDLKVSQAMSKS
YVKIPTSAMVTEALKLLHDKQQNCGLVVDCEDFLEGIVTLGDIRRMGFELHGDSFTSGDQLKPA
VHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVVVGMMHGLLEIFDQLKLVKPPQK
QGINFLAAIFPTVNAVQAAVTLGTGCSLGPEGPSVDIGKSCANGCSEMMENNRERRIALVAAGA
AAGIASGFNAAVAGCFFAIETVLRPLKAENSPPFTTAMIILASVISSTVSNVLLGERPAFIVPA
YELKSAAELPLYLILGMLCGAVSVVFGRLVVWFSNFFGYLKERYDFPIVVYPALGGLGAGLIAL
KYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAA
VGAVFGGSAGYLINSAVPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLP
LMGAVGLAIWVPSVVNQSKDGEPSRFRTPRRGYSSLSSEDRNSKSWRRGDSVNDLELTSLRTDN
YDTYNEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDKQQNCGLVVDCEDFLEGIVTLGD
IRRMGFELHGDSFTSGDQLKPAVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVV
VGMMHGLLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTLGTGCSLGPEGPSVDIGKSCA
NGCSEMMENNRERRIALVAAGAAAGIASGFNAAVAGCFFAIETVLRPLKAENSPPFTTAMIILA
SVISSTVSNVLLGERPAFIVPAYELKSAAELPLYLILGMLCGAVSVVFGRLVVWFSNFFGYLKE
RYDFPIVVYPALGGLGAGLIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVAT
ALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAGYLINSAVPGNAAVAQPQAYALVGMAATLASVC
SVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVVNQSKDGEPSRFRTPRRGYSSLSSEDRN
SKSWRRGDSVNDLELTSLRTDNYDTYNEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDK
QQNCGLVVDCEDFLEGIVTLGDIRRMGFELHGDSFTSGDQLKPA(-)
MGTVSQVETSSSPLFMSSMNGLGQVPQMKVQLGSAFRG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017