Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os02g0720700_circ_g.1 |
| ID in PlantcircBase | osa_circ_016318 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr2: 29900498-29903146 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os02g0720700 |
| Parent gene annotation |
Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isof orm 2. (Os02t0720700-01) |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os02t0720700-01:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.177084466 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
29903016-29900500(-) 29900540-29903073(-) |
| Potential amino acid sequence |
MMHGLLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTLGTGCSLGPEGPSVDIGKSCANG CSEMMENNRERRIALVAAGAAAGIASGFNAAVAGCFFAIETVLRPLKAENSPPFTTAMIILASV ISSTVSNVLLGERPAFIVPAYELKSAAELPLYLILGMLCGAVSVVFGRLVVWFSNFFGYLKERY DFPIVVYPALGGLGAGLIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVATAL CKGSGLVGGLYAPSLMIGAAVGAVFGGSAGYLINSAVPGNAAVAQPQAYALVGMAATLASVCSV PLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVVNQSKDGEPSRFRTPRRGYSSLSSEDRNSK SWRRGDSVNDLELTSLRTDNYDTYNEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDKQQ NCGLVVDCEDFLEGIVTLGDIRRMGFELHGDSFTSGDQLKPAVHVIHEWAWAGTPNEGAAWLRL QRLADTWHRILLIPVTGGVVVGMMHGLLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTL GTGCSLGPEGPSVDIGKSCANGCSEMMENNRERRIALVAAGAAAGIASGFNAAVAGCFFAIETV LRPLKAENSPPFTTAMIILASVISSTVSNVLLGERPAFIVPAYELKSAAELPLYLILGMLCGAV SVVFGRLVVWFSNFFGYLKERYDFPIVVYPALGGLGAGLIALKYPGILYWGFTNVEEILHTGKS ASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAGYLINSAVPGNAA VAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVVNQSKDGE PSRFRTPRRGYSSLSSEDRNSKSWRRGDSVNDLELTSLRTDNYDTYNEEMLLDDLKVSQAMSKS YVKIPTSAMVTEALKLLHDKQQNCGLVVDCEDFLEGIVTLGDIRRMGFELHGDSFTSGDQLKPA VHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVVVGMMHGLLEIFDQLKLVKPPQK QGINFLAAIFPTVNAVQAAVTLGTGCSLGPEGPSVDIGKSCANGCSEMMENNRERRIALVAAGA AAGIASGFNAAVAGCFFAIETVLRPLKAENSPPFTTAMIILASVISSTVSNVLLGERPAFIVPA YELKSAAELPLYLILGMLCGAVSVVFGRLVVWFSNFFGYLKERYDFPIVVYPALGGLGAGLIAL KYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAA VGAVFGGSAGYLINSAVPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLP LMGAVGLAIWVPSVVNQSKDGEPSRFRTPRRGYSSLSSEDRNSKSWRRGDSVNDLELTSLRTDN YDTYNEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDKQQNCGLVVDCEDFLEGIVTLGD IRRMGFELHGDSFTSGDQLKPAVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVV VGMMHGLLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTLGTGCSLGPEGPSVDIGKSCA NGCSEMMENNRERRIALVAAGAAAGIASGFNAAVAGCFFAIETVLRPLKAENSPPFTTAMIILA SVISSTVSNVLLGERPAFIVPAYELKSAAELPLYLILGMLCGAVSVVFGRLVVWFSNFFGYLKE RYDFPIVVYPALGGLGAGLIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVAT ALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAGYLINSAVPGNAAVAQPQAYALVGMAATLASVC SVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVVNQSKDGEPSRFRTPRRGYSSLSSEDRN SKSWRRGDSVNDLELTSLRTDNYDTYNEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDK QQNCGLVVDCEDFLEGIVTLGDIRRMGFELHGDSFTSGDQLKPA(-) MGTVSQVETSSSPLFMSSMNGLGQVPQMKVQLGSAFRG*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |